Chitinophaga sp. MD30: CK934_16315
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Entry
CK934_16315 CDS
T10354
Symbol
xth
Name
(GenBank) exodeoxyribonuclease III
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
chim Chitinophaga sp. MD30
Pathway
chim03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
chim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CK934_16315 (xth)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
chim03400
]
CK934_16315 (xth)
Enzymes [BR:
chim01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
CK934_16315 (xth)
DNA repair and recombination proteins [BR:
chim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
CK934_16315 (xth)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
Motif
Other DBs
NCBI-ProteinID:
ASZ12411
LinkDB
All DBs
Position
complement(4067204..4067977)
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AA seq
257 aa
AA seq
DB search
MRIATYNVNGVNGRLPVLLRWLEETAPDVVCLQELKAPQEKFPEQAIREAGYHAIWHGQK
SWNGVAILSRKDDLTESRRGLPGDEEDLHSRYLEATCNGIRICCLYLPNGNPAPGPKFDY
KLAWFKRLQLHAKELWSADVPVALIGDFNVMPTELDVYKPEKWVDDALFRPETRAAFHQL
MEQGWTDAIRKLHPDEKIYTFWDYFRNAYGRDAGLRIDHFLLSPHLDKRLKKAGVDKHVR
GWEKTSDHAPVWIELSK
NT seq
774 nt
NT seq
+upstream
nt +downstream
nt
atgagaattgcaacttacaatgtgaatggagtaaacgggcgcctgcccgtattgctccgc
tggctggaagaaaccgcccccgatgtagtatgtctccaggaattaaaagctccccaggaa
aaatttcccgagcaggcgatcagggaagcaggctatcatgctatctggcatggacagaaa
agctggaatggcgtcgccatcctttcccgcaaagacgacctgacagaatcacgacgcgga
ctgccaggcgatgaagaagacctgcatagccgctatctcgaagccacctgcaatggcata
cgtatctgctgtctctatctgcctaacggcaacccggcacctggtccgaaattcgattat
aaactggcctggttcaaaagattacaattacatgcgaaggaactatggtctgccgatgtg
ccggtagcccttatcggcgacttcaacgtaatgccgacagaactggacgtctataaaccc
gagaaatgggtagatgatgccctcttccgcccggaaaccagagcagccttccatcagctg
atggaacagggctggacagatgccatccggaagctgcatcccgacgaaaagatctatacc
ttctgggattacttccggaatgcttacggccgcgatgcaggactacgcatcgatcatttc
ctgttaagtccgcacctggataaacgattaaaaaaagcgggagtggacaaacatgtccgt
ggatgggaaaagaccagtgaccatgcaccggtatggattgaactatctaagtaa
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