Chitinophaga sp. MD30: CK934_22265
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Entry
CK934_22265 CDS
T10354
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
chim Chitinophaga sp. MD30
Pathway
chim03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
chim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CK934_22265 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
chim03400
]
CK934_22265 (ligD)
Enzymes [BR:
chim01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CK934_22265 (ligD)
DNA repair and recombination proteins [BR:
chim03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CK934_22265 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ASZ15062
UniProt:
A0A249T572
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All DBs
Position
5935071..5937008
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AA seq
645 aa
AA seq
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MLATLVDKPFDQPGWLYEVKWDGYRVITFKNKQILELKSRNDKSFNEKFYTVYQALQQWR
ADVIVDGEVVVVDETGKADFGQLQNWRSEADGTLRYYIFDLLWYKGYDLRGLPLEKRKVM
LQQLLPVSDILYYSHDFHTDGTAFLAAARNMSLEGIIAKRCNSTYHTGERTKDWLKIKAN
KRQEVIIGGYTRNEGSSKPFSALLLGVYRKGKLVYSGKTGTGWSVQQQKLLLQQFKRLEV
NKVPFDKEPDYNKPSRFRPHPPKAEVTWLRPLLICEVSFAEITNDGVMRHASFEGLLEDK
QPSDVVLEKETATAAIVKTADASALLLMPAAGGTRRTLLNPKDVTQVRKIGGHELKFTNL
HKVFWPKEKISKRDLINYYYQVASYILPYLKDRPQSLNRFPNGIDGKSFYQKDVTGKVPD
WMETYGYFSEGDEEQKHYLLCNDEATLLYMVNFGCIEMHPWSSTIRKPDHPSWAMIDLDP
DKQTFDQVIEAARMTKAVLDDMGVVSYCKTSGSTGLHIYIPLGNKYTYDQCQEFARGVVT
LVHRQLPAFTTLERIVSARKGKMYLDFLQNRPHATLAAPYSLRPKPGATVSMPLHWDEVR
AGMKMKDFNIFNALERLQSDSDIFKPVLGKGIDLKKIIASYQVKD
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atgctagctacactcgttgacaaacccttcgatcagcctggttggctttatgaggtgaag
tgggacggttatcgcgtcattactttcaagaataagcagatattggagttgaagtcacgc
aatgataagtctttcaatgaaaaattttatactgtttatcaagctttgcagcaatggaga
gctgatgttatagtagatggcgaagtagtggtggtagatgaaactggcaaagctgatttc
gggcagttgcagaactggcgaagtgaggcggatggtacgttacgttattatattttcgat
ctgttgtggtataaagggtatgatctaagaggtctgccgctcgaaaagcggaaagtcatg
ctacagcagcttcttcctgtaagcgatatactttattacagtcatgattttcataccgat
ggtaccgcgtttctggcagcagcccgtaacatgtcgttggaagggatcattgccaaacgt
tgcaatagcacttatcatacaggtgaacgaacgaaggactggctcaagataaaagccaac
aaacgacaagaagtcattattggcggttatacgcgtaatgagggaagtagcaaaccattc
agtgcgttgctactgggtgtgtatagaaagggtaaactagtctattctggcaaaacaggt
actggctggagtgtgcagcaacaaaagttattattgcagcaattcaagcgactagaagtc
aataaggtaccttttgataaggagccggattataataagcccagtcgtttccggcctcat
ccgcctaaggcagaggttacctggttacgaccattgctaatctgcgaggtaagttttgcg
gagatcaccaatgatggtgtgatgcgtcatgcttcttttgaggggttgctagaagacaaa
cagccgagtgatgtagtgttggaaaaagagacagcaacagctgccattgttaaaaccgcc
gatgcgagcgctcttctgcttatgcccgcggctggtggtacacgccgtacattactcaat
ccgaaagatgtaacgcaggtacgtaagattggtggtcatgaactaaaattcactaatttg
cataaggtattctggccgaaagaaaaaatcagcaagcgggatctgatcaattattattat
caggtagcatcttacatacttccttacttaaaggatcgtccgcaatcattgaatcgtttc
ccaaatggtatcgacggcaaatcgttttatcagaaagatgttaccgggaaagtgccggac
tggatggagacctacggatatttcagtgaaggtgatgaggagcagaaacactatttgtta
tgtaacgacgaagcgacgctactgtacatggtcaacttcggttgtattgagatgcatccc
tggagtagtacgatcaggaaaccagatcatccttcctgggcaatgatcgacttggacccg
gataaacagacttttgatcaggtgattgaggctgcgaggatgacgaaggctgtactagat
gatatgggcgtagtgtcttattgtaaaaccagtggatcaaccggattgcatatctatatc
ccattagggaacaagtatacgtatgatcaatgtcaggaatttgcgcggggggtagttacg
cttgtacatcgtcagctaccggcctttacaacacttgagcggatcgtcagtgcacgaaag
gggaagatgtatctcgactttctgcaaaaccggccgcatgcgacacttgcagcaccttat
tccctgcgtcccaaacccggtgctacagttagtatgccattgcactgggatgaggtaaga
gcggggatgaaaatgaaagactttaacatcttcaatgcattggagcgactacagagtgac
agcgatatattcaaaccagtgcttggaaaaggtattgatctaaagaaaattattgcgtca
taccaggtaaaggattga
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