Chitinophaga sp. MD30: CK934_26860
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Entry
CK934_26860 CDS
T10354
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
chim Chitinophaga sp. MD30
Pathway
chim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CK934_26860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chim03019
]
CK934_26860
03016 Transfer RNA biogenesis [BR:
chim03016
]
CK934_26860
Enzymes [BR:
chim01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
CK934_26860
Messenger RNA biogenesis [BR:
chim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CK934_26860
Transfer RNA biogenesis [BR:
chim03016
]
Prokaryotic type
tRNA degradation factors
CK934_26860
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
KH-I_KHDC4-BBP
RNase_II_C_S1
HutF_N
KH_2
OB_PDCD11
Motif
Other DBs
NCBI-ProteinID:
ASZ14310
LinkDB
All DBs
Position
complement(7073959..7076280)
Genome browser
AA seq
773 aa
AA seq
DB search
MNLTPISVKFDIGDGRIVTIETGKLARQADGAVTVRLGNCILLATVVANKEPKPGQSFFP
LTVDYQEKFASAGRIPGSFFKREGRLSDYEVLISRLIDRALRPLFPDDYFCEVQVLVTLI
SSDPEVMPDALACLAASAALAVSDVPIQEIISEVRVARIDGNYVINPGRTDLAKADMDFI
IGATEKNIMMVEGESKECSEEDMIKAIEIAHAAIRAQVKAQEELRDLKGVIGKREYTKPH
QNDELKAKVIAFAQDKIYQVAKAASAKHDRGDAFAKISEELVEHLGELPEEDAPLVREYF
HSLEKEVVRNMILDESIRLDGRALDQVRPLAMETDILPSPHGSALFTRGETQSLTTVTLG
TPDDELLIESAATSNYNKFILHYNFPPFSTGEVKPMRGPGRREVGHGNLAMRSLKQMMPG
SDYAYTVRVVSDILESNGSSSMATVCAGSLALMDAGVPLPKHVSGVAMGLISRASDGKWA
VLTDILGDEDHLGDMDFKVTGTREGICGIQMDIKVDGLSMDVMRQALEQALRGRLHILDA
MYTAVPAARPEPKPHAPRMEKIIIDREYIGAVIGPGGKVIQEIQRETGTTINIEEVGETG
EVSIFSAQREGLEKALTWIKGIVAIPEVGEVYESTVKSVMPYGAFVEFMPGKQGLLHISE
ISWKRLETMEGVLTEGEKVKVKLTGTDPKTGKFKLSRRALMPKPEGYVEKPEREERGDRG
DRGDRGPRRDDRGGDRGPRRDDRGGDRGPRRDDRGGDRGPRPSTQPDNPTFDE
NT seq
2322 nt
NT seq
+upstream
nt +downstream
nt
atgaatctgacacctatttccgttaaattcgatataggagatggccggatcgtaaccatt
gaaactggtaagttagcccgccaggccgatggtgccgtaacggtacgtctgggcaattgt
atcctgttggctaccgtagtagcaaacaaggagcccaaaccaggacagtctttcttcccc
cttaccgtagactaccaggaaaaatttgcatctgccggacgtattcccggctcttttttt
aaacgcgaaggccgtctctctgactatgaagtgttgatttcccgcctgatcgaccgcgcg
ctccgccctttgttccctgacgattatttctgcgaagtacaggtattggtaaccctcata
tcttctgaccctgaagtaatgccggatgcgcttgcctgtctcgctgcatctgccgcactg
gccgtttctgacgttcccatccaggagatcatttccgaggtaagggtcgcccgtattgat
ggtaattacgtgatcaaccccggccgtactgacctcgctaaagctgatatggacttcatc
atcggcgctaccgagaaaaatatcatgatggtggaaggggaaagtaaagagtgtagcgaa
gaagatatgatcaaagcgatagagatcgctcatgccgccatccgcgcacaggtaaaagcc
caggaagaactgcgcgacctgaaaggcgtaatcggtaaacgggaatataccaaacctcac
cagaatgacgaactcaaagcaaaagtgatcgcttttgcacaagataaaatctaccaggta
gctaaagcagcttctgccaaacatgatcgtggtgatgctttcgccaagatcagtgaagaa
ctggtagaacatctcggtgaactgccggaagaagatgctccgcttgtacgcgaatacttc
cattccctggaaaaagaagtagtgcgtaacatgatcctcgacgagtctatccgcctggat
ggccgcgcccttgatcaggtgcgcccgctggcgatggagacagatatcctgccttcgccg
catggctccgccctgtttacccgtggtgaaacacaatccctcaccaccgtaacattgggt
acaccggatgatgaactgctcatcgaaagtgcggctacttccaactacaataaatttatc
cttcactataatttccctcccttctctaccggtgaggtgaaaccaatgcgtggccctggc
cgtcgcgaagtaggacacggtaacctggccatgcgctccctcaaacaaatgatgccgggt
agcgattacgcctatactgttcgcgtagtgtctgatatactcgaatcaaatggttcctct
tccatggcaactgtttgtgccggctccttggctttgatggacgcaggtgtacccctcccg
aaacacgtttccggtgtggcgatgggcttgatctcccgcgcttcagatggtaaatgggct
gtactgaccgatatcctcggcgatgaagatcacctgggagacatggacttcaaggtaacc
ggtacccgcgaaggtatctgcggtatccagatggatatcaaagtagatggcctcagcatg
gatgtaatgcgccaggcacttgaacaagcactgcgtggtcgcctgcatatcctggatgcc
atgtacactgctgtacctgctgcccgtccggaacctaaaccacacgcgcctcgtatggag
aaaataatcatcgaccgcgaatatatcggtgcggtgatcggacccggtggtaaagtcatt
caggaaatccaacgcgaaaccggtactaccattaatattgaagaagtaggcgaaaccggt
gaagtaagcatcttctccgctcagcgggaaggcctggaaaaagcattaacctggatcaaa
ggtatcgttgctatccccgaagtaggtgaagtatacgagtctactgttaaatccgtgatg
ccatacggtgcattcgtagaattcatgcctggaaaacaaggcttgctccatatttccgaa
atctcctggaaacgcctcgaaacaatggaaggcgtactcacagaaggcgaaaaggtaaaa
gtaaaactcaccggtaccgatccaaagaccggtaagttcaaactcagccgcagagccctg
atgcctaaaccggaaggttatgtggaaaaaccggaaagagaagagcgtggagatcgtggt
gacagaggtgatcgtggccctcgtcgcgatgacagaggtggtgatcgtggccctcgccgc
gatgacagaggaggagaccgtggcccccgtcgtgatgacagaggcggcgatcgtggccct
cgcccatcaacacaaccagataatcccacctttgatgaatag
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