Corynebacterium hindlerae: J5O04_00940
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Entry
J5O04_00940 CDS
T08794
Name
(GenBank) ATP-dependent RNA helicase
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
chin
Corynebacterium hindlerae
Brite
KEGG Orthology (KO) [BR:
chin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chin03019
]
J5O04_00940
Enzymes [BR:
chin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
J5O04_00940
Messenger RNA biogenesis [BR:
chin03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
J5O04_00940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
Flavi_DEAD
AAA_30
AAA_11
ResIII
AAA_19
Motif
Other DBs
NCBI-ProteinID:
QTH59748
LinkDB
All DBs
Position
209729..211936
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AA seq
735 aa
AA seq
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MFDLEKIGAGLPVSGILAELHDAHSAVIQAPPGTGKTTLVPPAVFNAVGGRVVVVAPRRV
AVRAAAARLRALSGLPVGFAVRGASQPSDLVEFVTPGVLLRRLLQDPFLEGVSAVVVDEV
HERGLDTDLVLGMLIELSSVRDDLALFAMSATLDAARFSELLGGVPVLETPSVLHPLDIS
YQAIPGRLEGTRSFYAALARLAESHVDAHSVLVFVPGAREVAWVCEEIDAYPLHGRLSLA
EQDAALYTDAPRVIVATNVAESSITVPGVRTVIDSGLAREPRYDRARGMTGLVTASISRS
SADQRAGRAGREGPGRVIRAYSASEYEAFKPFTTPEIQTADLTQAVLFLQCWGSLDVPLL
DPMPAASVEDALATLRTLGADDPEVARSLALLPVAPRLGRALLETGDARTVAALSDQPSG
DIARIQPPAREVKRLAGSGTAQPGLTTAFAYPEWVARRVADNEFQLASGTRATLGFPDLG
SEWIACAAVSRTKTGGVIRAAAALTQEEALRVVPVVEETSALVEDTRVKGRRVRRAGAIE
LSSTPVALSPVEIEEALTNAVRAQGFGILRTSEGFAQLRDRLAFIHAQLGAPWPDVSDEA
LTRTWSGSSATVGADFLKTLLPWPEAARLDELAPEHLKVPSGRSHAVHYDSGRPVCRVKL
QECFGLAESPVFCDVRVQFHLLSPAGRPLAVTDDLASFWNGPYRGVRAEMRGRYPKHPWP
EDPWSAPATALTKRK
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
ttgtttgatttagaaaagatcggcgctggtctgcctgtttcgggcatcctcgccgagctt
cacgacgcccacagcgccgtcatccaagcaccgcccggcacgggtaaaacgacgctcgtc
ccgccggcggtgtttaatgctgtcggtggccgtgtcgtagtggtggcgcctcggcgagtt
gccgtgcgggcggccgcggcgcggcttcgtgcgctgtcgggtcttccggtcggattcgcg
gtacgcggcgcttcgcagccttcggacctggtggagttcgtcactcccggagtgttgttg
cgccgactgttgcaggaccccttcttggagggcgtgtctgccgtggtagtggacgaggtg
cacgagcgcgggctagacacggacctggtgcttggcatgctcattgagctgagctcagtt
cgggacgatctcgctctcttcgcgatgtccgcgaccctggatgctgcccggttctccgag
ttactcggcggcgtgccggtgctggagaccccgtctgtgctgcatccgctggatatttct
taccaggcgattcctggccggctggagggtacgcggtcgttttacgctgcgcttgcgcgc
ctcgccgagtctcatgttgatgcgcattccgtgttggtctttgttcccggcgcgcgagaa
gtcgcgtgggtgtgcgaagagattgatgcatatccgctgcatgggcgtctgtccctggcg
gagcaagatgcagcgctctataccgacgctccccgcgtaatcgtggcgacgaacgtggcc
gagtcttccatcaccgttcctggggtgcgcaccgtgattgattcggggttggcacgcgaa
cctcgttatgatcgcgcccgcgggatgacgggcctggtcacagcttctatctcccggtct
tctgcggaccagcgcgctggccgtgcgggccgcgagggacctggccgcgtgattcgcgcc
tactctgccagtgagtatgaggcgttcaagcctttcaccaccccggaaattcaaacggct
gacctcacccaggcagtgctgttcttgcaatgttggggttcgcttgacgtaccgctgctg
gatccaatgcccgcagcctcggtcgaggatgcactcgcaacgctgcgcactttgggggcg
gacgatcctgaggtggcgcgttcgctggcgctgctgccggtggcccctcggctgggccgg
gcgctgttggaaaccggggatgcccgcaccgtggctgcgctttccgatcagccctccggc
gatatcgcccggattcagccacctgcccgcgaggtgaaaagactggcgggttccggcact
gcccaacccgggttgaccacggcctttgcctacccggaatgggtagcgcggcgggtggct
gacaatgagttccagctggcgtcgggcacccgcgctaccttgggtttcccggacctgggc
tccgagtggattgcctgcgccgcggtgtcgcgcaccaaaaccggtggcgtgattcgcgca
gctgcagcgctaacccaagaggaagcgctgcgggtggtcccggtggtggaggagacctcc
gcgctggtggaagatactcgtgtgaaagggcgtcgggtgcggcgagcaggcgctatcgaa
ctgtccagtaccccggttgcgctttctcctgtggagattgaagaagctcttacaaatgcg
gtgcgcgcccaggggtttggcattttgcgcacttccgagggttttgcgcaactgcgggat
cgcttagctttcatccatgctcagctgggcgcgccgtggccggatgtgtccgacgaagcc
ttgactcgcacctggtcgggttccagtgcaacggtcggtgccgacttcctcaaaaccctc
ctcccctggcccgaagctgcgcgcctggatgagctcgccccggagcacctgaaggttccg
agcggccgctcacacgcagtgcactacgattccgggcgcccggtatgccgggtcaagctg
caggaatgcttcggcttggctgagtccccagtgttctgtgacgtacgggtgcagtttcat
ctgctctcccccgcgggccggccgctcgccgtcaccgatgatctcgccagtttctggaac
ggtccctaccggggcgtacgcgccgagatgcgagggcgctacccgaagcacccgtggccg
gaagacccgtggtcggcgccggcgacagcgttaacgaagcgtaagtaa
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