Corynebacterium hindlerae: J5O04_09620
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Entry
J5O04_09620 CDS
T08794
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
chin
Corynebacterium hindlerae
Pathway
chin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J5O04_09620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chin03019
]
J5O04_09620
03009 Ribosome biogenesis [BR:
chin03009
]
J5O04_09620
Enzymes [BR:
chin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
J5O04_09620
Messenger RNA biogenesis [BR:
chin03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
J5O04_09620
Ribosome biogenesis [BR:
chin03009
]
Prokaryotic type
rRNA helicases
J5O04_09620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
UvrA_inter
CMS1
adh_short
HEM4
Motif
Other DBs
NCBI-ProteinID:
QTH59059
LinkDB
All DBs
Position
complement(1994952..1996940)
Genome browser
AA seq
662 aa
AA seq
DB search
MSNTENVASGVEELENVTTSETQENSLDVEQDVRDANTSEDDSTQGFDNLGLPAEVLKAI
TKVGYETPSPIQSETIPLLMEGRDVVGLAQTGTGKTAAFALPVLSRIDKSVRAPQALVLA
PTRELALQVADSFQEFADHLGGINVLPIYGGQAYGIQLSGLRRGAQIVVGTPGRVIDHLK
KGTLDISGLRFLVLDEADEMLNMGFQEDVERILEDTPAEKQVALFSATMPNGIRRISKQY
LVDPAEVTVKSETRTNTNITQRFLNVSHRNKLDALTRILEVTEFEAMIMFVRTKHETEEL
AEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAARGLDVERITHVFNYD
IPHDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIERATNATLEEMDLPTVDEVNE
SRKAKFADSITNSLEDSQLALFRSLVKAYSEERDVPLEDIAAALATQAQAGDEFLMKELP
PERRDRRDRFDRDDRRDRDRGGRFERRDRGSRFERSQDMDVYRLAVGKRQHVRPGAIVGA
LANEGGLSSKDFGRIIIAVDHTLVELPKNMPASVLERLADTRISGQLIHIEAAPGADMNQ
RPGGYGGGRGGYRDRDDRRGGRGRFDRDDRRGGRGGYDRDDRRGGRGGYRDRDDRRGGRY
DR
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atgagtaacaccgagaacgttgccagcggcgtcgaagagctggaaaatgtcacaacgtcg
gaaactcaggaaaattcgctggacgtcgagcaggacgtcagggatgcgaacacttctgag
gacgactccacgcaaggtttcgataacctaggacttcctgcagaagtgctgaaggctatt
accaaggttggttacgaaaccccatccccaattcagtccgaaactatcccattgttgatg
gaaggccgcgatgttgtcggcctcgcccagaccggtactggtaaaaccgcagcgtttgct
cttccggtgctgtcgcgcatcgataagtctgttcgtgccccgcaggcgctcgttctggcc
cctacccgtgagcttgcgctgcaggtggcggactctttccaggagtttgctgaccacctc
ggtggaatcaatgtgctgccgatttacggtggccaggcttatggcattcagctgtccggt
ttgcgccgtggcgcgcagatcgtcgtcggtacgccaggtcgtgtcattgaccacttgaag
aagggcacgctggacatttccggcctgcgtttcctggtgctggacgaagccgacgagatg
ctcaacatgggcttccaggaagacgtcgaacgtattctggaggacaccccagctgagaag
caggtggcactgttttccgcgacgatgccgaacggtatccgtcgcatctccaagcaatac
ctggttgacccagcagaagtgacggtgaaatccgaaacccggacgaacaccaacatcacc
cagcgcttccttaatgtttcacaccgcaacaagctcgacgcactgacccgcattctggag
gtcaccgagttcgaagcgatgatcatgttcgtgcgcaccaagcacgaaaccgaggaactg
gccgagaagctccgcgcccgtggcttctccgccgcggccatcaatggtgacattgcgcag
gcacagcgcgaacgtaccgtggaccagctaaaggacggtcgcttggacatcctggtggcc
accgacgtggcagcccgtggtctggacgtggaacgcatcacccacgtgttcaactacgac
attccgcacgacaccgagtcctacgttcaccgcattggccgcactggccgtgctggccgt
tccggcgaagcgatcctcttcgtcacgccacgcgagcgtcgaatgctgcgttccattgag
cgcgcgactaatgcgacgctggaagagatggatctgccgaccgtggatgaggttaacgag
tcccgcaaggctaagttcgccgactccatcaccaactctctagaagactcccagttggcg
ctgttccgttccttggttaaggcctactccgaggaacgcgacgttcctctggaggacatc
gctgccgcgctggccactcaggcacaggctggcgacgagttcctgatgaaggaactgcca
cctgagcgtcgggatcgacgcgaccgtttcgatcgggatgaccgccgtgatcgtgaccgg
ggtggtcgatttgagcgtcgtgaccgcggttcccgcttcgagcgcagccaagacatggac
gtgtaccgcctggcagtgggtaagcggcagcacgtacgtcctggcgctatcgttggcgcc
ctggcgaacgagggtggcctgtcctccaaggacttcggtcgcatcatcatcgccgtggac
cacaccttggtggaactgccgaagaacatgccggcttctgtgctggaacgcctcgcggac
acccgcatttccggccagctcatccacatcgaggctgctcctggcgctgacatgaaccag
cgtcctggtggctatggtggtggccgtggcggctaccgggatcgggatgatcgccgtggc
ggccggggtcgctttgatcgtgatgatcgccgtggcggccggggcggctatgaccgtgat
gatcgtcgcggcggacgcggtggctatcgtgatcgtgatgatcgtcgcggcggtcgctac
gatcgctag
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