Chitinophaga sp. XS-30: FW415_02390
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Entry
FW415_02390 CDS
T06207
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
chit
Chitinophaga sp. XS-30
Brite
KEGG Orthology (KO) [BR:
chit00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
chit03016
]
FW415_02390
Enzymes [BR:
chit01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
FW415_02390
Transfer RNA biogenesis [BR:
chit03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
FW415_02390
Prokaryotic type
tRNA splicing ligases
FW415_02390
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QEH39773
LinkDB
All DBs
Position
complement(585434..586843)
Genome browser
AA seq
469 aa
AA seq
DB search
MAKLKLRGKDLRNIGFPESPVISVAITVMEQHYKHHSQEDALDLLQQVLQEPEAYRADEH
LGKIAEKLIVEEITDIPLNEAPADYAVYGREFIDEGAISQMDYAMRLPVTAGGALMPDAH
HGYGLPIGGVLAVKNAVIPYGVGVDIGCRMCLSILDIPHEQLEKRASSFKRELIAGTVFG
AGAGWKPRLEDEVLEHPAFGEISLLKHLQQKAADQLSTSGSGNHFVEWGLADILDADNEW
SLAPGLYTALLSHSGSRGLGAQIAGHYTKVAREITPLPREVQHLAWLEMDSEEGQEYWLA
MNLAGDYASACHHHIHKRLIKAVGGQLLARVENHHNFAWKETHQGEEVIVHRKGATPAGK
GVLGVIPGSMTAPGFIVRGRGAAASLDSASHGAGRQMSRAKANQSFTRHELTRLLKEHGV
TLVGGGLDEAPGAYKDIATVMKAQTALVDIVGRFYPKIVRMADGGPRED
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaattaaaattgcggggtaaagacctccggaacatcgggttcccggagtccccg
gtcatcagtgtggccatcaccgtgatggagcagcactataaacatcattcacaggaagat
gcgctggacctgctgcagcaagtgctgcaggagccggaagcatacagagcagacgaacac
ctcggaaagatcgcggaaaagctgatcgtagaggagataacggatatcccgctgaacgaa
gcaccggcagactatgccgtgtacggacgggaatttattgacgaaggcgccatcagccag
atggactacgccatgcgcctgccggtaaccgccggcggggcgctgatgccggatgcccat
catggctacggcctgcctatcggcggtgtgctggcggtgaaaaatgccgtgatcccctac
ggcgtgggggtagatatcggctgcaggatgtgcctgagcattttggatatcccgcatgag
cagctcgaaaagcgggcctcctcttttaaacgggagctgatcgccggtacggtattcggc
gcaggagcgggatggaaaccgcggctggaagatgaagtgctggagcatccggccttcggg
gagatcagcctgctgaaacatctgcagcaaaaggctgcggaccagctgagcacttccggt
tccggcaaccattttgtggaatggggactggcagacatcctggatgcggataacgaatgg
tcgctcgctcccgggctgtacaccgctttgctgtcgcattccggttcccggggcctgggg
gcacagatcgcagggcattacaccaaagtggcgcgggagatcacgccgttgccgcgggaa
gtccagcatctcgcctggctggagatggacagtgaagaagggcaggaatactggctggcc
atgaacctggccggagattatgcctccgcctgtcaccatcacattcataaacggttgatc
aaagccgtagggggacaattgctggcgagggtggagaaccaccataacttcgcgtggaaa
gagacccatcagggcgaggaggtgatcgttcaccggaaaggcgctacgccggccggtaaa
ggcgtgctgggcgtgattcccggctctatgaccgcaccgggcttcatcgtcagggggcgg
ggcgcagccgcatcgctggatagcgcgtcccacggtgcgggaaggcagatgagccgggca
aaggcgaaccagtcgttcaccaggcatgagctgaccaggctgctgaaagagcatggggta
acgctggtgggcggcggactggacgaagcgccgggcgcgtataaggacattgccaccgtg
atgaaagcgcagaccgcgctggtggatattgtcggccggttctacccgaagatcgtgcgg
atggctgacggagggccgcgggaagattag
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