Chitinophaga sp. XS-30: FW415_03475 Help Entry FW415_03475       CDS       T06207                                  Symbol ligD Name (GenBank) DNA ligase D   KO K01971   bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] Organism chit  Chitinophaga sp. XS-30 Pathway chit03450   Non-homologous end-joining Brite KEGG Orthology (KO) [BR:chit00001]  09120 Genetic Information Processing   09124 Replication and repair    03450 Non-homologous end-joining     FW415_03475 (ligD)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:chit03400]     FW415_03475 (ligD) Enzymes [BR:chit01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      FW415_03475 (ligD) DNA repair and recombination proteins [BR:chit03400]  Prokaryotic type   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     Two-component NHEJ DNA repair complex      FW415_03475 (ligD) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S mRNA_cap_enzyme GH3 Motif Other DBs NCBI-ProteinID:  QEH39974 UniProt:  A0A5B9WI88 LinkDB All DBs Position complement(843973..846669) Genome browser AA seq 898 aa AA seqDB search MSLAAYKKKRDFKQTSEPRSGKARGGAHAFVVQRHHASRLHYDFRLEVNGALKSWAVPKG PSLDPADKRLAMEVEDHPYDYKDFEGEIPPGNYGAGYVHIWDQGTYELLDDKGKDFDKQA LQEWRSGSLKIILHGKKLKGEFALVKMKGREENSWLLIKHRDRYAKEGYDSEDHTPKRIK EKLKGPENNKAAGKRGTRKPAAKRAKAPAKRSATATPKPGRAKMKDIYKPMLATLVDAPF DREGWIFETKWDGYRAIANVSDGEATLYSRNRLSFNEMFAPVVKAVEKIPHNVVLDGEVV VLGAKGRSDFQALQQYKTTGKGKLTYAVFDLLYLDGHHLTDMTLIERKALLEEIVRQLND AVVQYSGHKAEKGIKLFEDAVKAGWEGIIAKNGESNYAEGVRSQNWLKIKVLNRQEAIIC GYTEPRGGRKRMGALILGVYDNGKLRYAGHCGGGFDQQSLKAMFERLQPYRRETSPFSTK IKTNMPVTWVEPELVCEVKFSEWTGEGIFRQPVFVAMREDKPAAEVKKELPKHLKTMPDT RKKKGAAVKRASGKPPAATRKKSGSSSSAASASKKATPAAKSRPRKSGSSAKAATKAGDR NERSLRLGNRNVPLTNQQKIYWPDEKITKGELIDYYLSAADYLLPYLKDRPLSLHRFPNG IKGMSFYQKDLDLGSVPSWLKTFPVLSESTGKNVDYLVCNNTATLAYMINLGCIEINPWL SRTAKPDYPDYIVIDLDPEDIAFEHVVDTANVVHKILEGYNIQSFVKTSGASGMHIYIPT GAKYAYETCRLFAEYIANEAHAQLPEVTSVIRAKSRRKKKVYIDFLQNSRGQTIAAPYSA RPRPGATVSTPLHWKEVNKKLDIRNFHIGNTLKRLEKHGDIWDGISRVKNNLKTVLKQ NT seq 2697 nt NT seq  +upstreamnt  +downstreamnt atgagtttggcggcctataagaaaaaaagggattttaaacagacctcggaaccccggagc ggcaaggcccgcgggggagcgcacgcttttgttgtacagcggcatcatgcctcccggctg cattacgacttccggctggaggtgaacggagcgctgaaaagctgggcagtgccaaagggg ccttccctggacccggcggacaaacgcctggctatggaagtggaagatcatccctacgat tacaaggattttgaaggggaaattccccccgggaattacggcgccggatatgtgcatatc tgggaccagggaacgtatgagctgctggatgacaagggaaaagactttgataaacaggca ttgcaggaatggcggtccggcagtctgaaaataattctgcacggcaaaaagctgaaagga gaatttgcgctggtgaagatgaaaggaagggaagagaatagctggttgctgatcaagcac cgggaccggtatgcaaaagagggatatgacagcgaagatcatacgccaaaacggataaag gagaaactgaaagggccggaaaacaacaaggcggcgggaaaacgcggaacgcggaagcct gcagcgaaacgggcgaaggccccggcaaaacggtctgccacagccaccccaaagcccggc cgcgcaaagatgaaagacatttacaagcctatgctggccacattggtggatgcgcccttc gaccgcgaaggctggatctttgaaacgaaatgggacggctaccgcgctattgccaacgtc agcgatggtgaagcaacgctgtattcccgcaaccggctttccttcaatgagatgttcgcg ccggtggtaaaagccgtggagaaaattccgcataatgtggtgcttgacggcgaggtggtg gtgctgggcgccaaaggccggtcggacttccaggccctgcagcaatacaagaccaccgga aaagggaagctgacctatgcggtatttgatctcctttatcttgacgggcatcacctgacg gatatgaccctgatcgagcgcaaggcgttgttggaggagatcgtccggcagctgaatgat gcggtagtgcagtactccggccacaaggccgaaaaaggaataaagttatttgaagatgcc gttaaagcgggatgggaagggatcatcgcgaagaatggagagagcaattatgccgaaggc gtccggagccagaactggctgaagataaaagtgcttaacaggcaggaggcgatcatctgc ggatatacggagccgcggggaggccggaagcggatgggagcactgatcctcggtgtgtac gacaacggcaaactgcggtatgccggccattgcggcggcggtttcgatcaacagtcactc aaagcgatgtttgaaagactgcagccttaccgccgggaaacctcgccattcagcacaaaa ataaaaaccaatatgccggtcacctgggtggaacctgaactggtatgtgaagtgaagttc tccgagtggaccggcgaagggattttccgccagccggtctttgtggccatgcgggaagat aaaccggcggcggaagtgaaaaaggagctgccaaaacatttgaaaaccatgcctgacacc aggaaaaagaagggcgctgctgtaaagcgcgcatccggcaaaccgcctgcggcaacccgg aagaaaagcgggagcagttcttctgccgcatctgcatcgaaaaaggccacgccggcagca aaaagccgcccgcggaaatccggatcttcagcaaaagcggcaaccaaagccggggacagg aatgaacgcagcctgcgtctcggcaaccgcaatgtaccactcaccaatcagcagaagatc tactggcctgatgaaaagatcaccaagggggagttgatagactattatttgtccgcagcg gactatctgctgccctacctgaaagaccggcccttgtcattacaccgtttccccaacggc atcaagggcatgagcttttaccagaaagatctggacctgggctccgttccctcctggctg aagacctttccggtgctgtcggaatctaccggcaagaatgtggactacctggtctgcaac aataccgcaaccctggcgtatatgatcaacctgggctgcatagagatcaatccctggctg tcgcgcacagccaaaccggattacccggactatatcgtcattgatcttgatccggaagat attgcatttgaacatgtggtggacacggccaacgttgtgcataaaatactggaagggtat aacatccagtcattcgtgaagacttccggcgccagcggcatgcatatttatattcccaca ggagcgaaatatgcatacgagacctgccggctgttcgcggagtacattgccaatgaggcg catgcgcagctgccggaagtaaccagtgtgatccgcgcaaaatcccgccggaagaaaaaa gtgtatatcgacttcctgcagaacagccggggacagacgatagccgcgccgtattccgcc cgcccccgtccaggtgcaaccgtatccacacccctgcactggaaagaggtcaacaaaaaa ctggatatccggaactttcacatcgggaataccctgaaacggctggaaaaacacggcgat atatgggacgggatctcccgggtaaagaacaacctgaaaaccgtactaaaacaatag

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