Chitinophaga sp. XS-30: FW415_04285
Help
Entry
FW415_04285 CDS
T06207
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
chit
Chitinophaga sp. XS-30
Pathway
chit03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chit00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FW415_04285 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chit03019
]
FW415_04285 (recQ)
03400 DNA repair and recombination proteins [BR:
chit03400
]
FW415_04285 (recQ)
Enzymes [BR:
chit01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FW415_04285 (recQ)
Messenger RNA biogenesis [BR:
chit03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FW415_04285 (recQ)
DNA repair and recombination proteins [BR:
chit03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
FW415_04285 (recQ)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
RQC
RecQ-1-like_HTH
Helicase_C
RecQ_Zn_bind
HRDC
ResIII
HTH_40
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
QEH43946
LinkDB
All DBs
Position
1015377..1017581
Genome browser
AA seq
734 aa
AA seq
DB search
MAVAKVSLLDALHEHFGFDSFKGNQEKIIKNILSGKDTFVIMPTGGGKSLCYQLPALMSP
GVALIVSPLIALMKNQVDLVRSYSSKDNVAHFLNSTLTKAQIKKVRTDLQSGKTKMLYVA
PETLTKQENIDFFKELEISFIAVDEAHCISEWGHDFRPEYRRLKEMIDMISSKLPVIALT
ATATPKVQSDIVKNLELRSPEIFMSSFNRPNLYYEIRPKRKKDQTIREIVKFIHLHKGKS
GIIYTLNRKTTEELADMLVANGIRAVAYHAGLDSGTRAQRQDMFLLEDVEVIVATIAFGM
GIDKPDVRFVIHYNIPKSLENYYQETGRAGRDGLEGICVCFYSYQDVQKLEHLMRDKPLS
EREMGAQLINETVAYAESAVCRRKVILHYFGEKYEQENCGKCDNCLNPKEKIEVKNRVVI
TLKAIQKLEERFGTDYVVNIITGKANPQITTFRHDKLDVFGEGKEFDAHFWNSLIRQMML
EGLIEKDIEEYGLLKITEKGRKFIKKPFSIWVALNHQFEEDTAAEEEDALSAEAQASADP
VLFDMLKELRKKVAKEKNLPPFVIFLETSLEDMATQYPTTVQELEKIQGVSKGKAVRYGK
VFVDVIARFVEENDIVKPDDFVMKSVVNKSGLKVFIIQNIDKKMPLETIAKNKELSIPQL
LDEMETIVASGTKLNLDYCIDEELDDYAQDEIIEYFKGCETSSLQVAKDELTEGNYTIEQ
LKLMRIKFLVEYGN
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atggcagttgcaaaggtaagtttgttggatgcattacacgaacattttgggtttgattcc
ttcaagggaaaccaggagaagatcattaaaaatatactttccggaaaagatacattcgtg
ataatgcctacaggtggcggtaaatccctgtgttaccagctccccgcgctcatgagcccg
ggcgtggcgctcatcgtaagccccctgatagcgctgatgaaaaaccaggtagacctggtt
cggtcatacagcagtaaggacaatgtggcccactttctcaattccaccctcaccaaggcc
cagatcaagaaagtacgcacggacctccagtccggaaagaccaaaatgctgtatgtggcg
cccgaaacgcttacgaaacaggaaaatatcgacttcttcaaggaactggaaatatccttt
atcgcggtggacgaagcgcattgcatctccgaatgggggcatgatttccggccggaatac
cgccggctgaaggaaatgatcgacatgatcagcagcaagctgccggtcatcgccctgacg
gctaccgctacgccaaaggtgcaaagcgatattgtcaagaacctggaattgaggtcgccc
gagatcttcatgtcctccttcaaccgcccgaacctgtattacgagatcaggcccaagcgg
aaaaaggaccagacgatccgggagatcgttaaattcattcacctgcacaaaggtaaaagc
ggcatcatctacacgctgaaccgcaaaaccaccgaggagctggccgatatgctcgtggcc
aacggcatcagggccgtagcctatcatgcgggactcgattccggcacccgggcgcagcgg
caggatatgttcctgctggaagatgtggaggtcatcgtggccactatcgccttcggtatg
gggatcgataaaccggacgtccgttttgtgatccattacaacattcccaaaagcctggaa
aactattaccaggaaaccggccgcgccggacgggacgggctcgaaggcatctgcgtatgt
ttctactcctaccaggatgtgcagaagctggagcacctgatgcgggacaagccgctcagc
gaaagggaaatgggcgcgcagctcatcaacgaaaccgttgcctacgcagagagcgccgtc
tgccgccggaaagtgatcctccattatttcggggagaaatatgaacaggagaattgcggc
aaatgcgacaattgcctcaatccgaaagagaaaatagaggtgaagaaccgcgtggtgatc
accctgaaggccattcagaagctggaagagcgcttcgggacggattacgtcgtgaatatc
atcaccggtaaagccaacccccagatcaccactttccggcacgacaagctggatgtattc
ggggaagggaaggagtttgacgcacatttctggaattccctcatccggcagatgatgctg
gagggcttgatagaaaaggatattgaagagtacggcctgctgaagatcaccgaaaaaggc
cgcaagttcatcaaaaaaccattttccatctgggtagcactgaaccatcagttcgaagaa
gataccgccgcggaggaagaagacgccctgtccgccgaagcccaggcttccgcagatccc
gtgcttttcgacatgctgaaagagctgcgcaaaaaggtcgccaaagaaaagaatctcccc
ccattcgtcatcttcctggaaacatccctggaagatatggccacgcaataccccaccacc
gttcaggaactggaaaagatccagggagtgagcaaaggaaaagcggtccgctacggaaag
gttttcgtggatgtgatcgcccggttcgtggaagagaacgacatcgtgaaacccgatgat
tttgtgatgaaaagcgtggtgaataaaagcgggctgaaagttttcatcatccagaacatc
gacaagaaaatgccgctggaaaccatcgccaaaaataaagaactgagcatcccgcagctg
ctggacgaaatggagaccatcgtagccagcggtaccaagctcaatctggattattgcatc
gatgaggaactggacgattatgcgcaggacgagatcatcgaatacttcaaaggctgcgaa
acctccagtctgcaggtagccaaagatgaactgacggaaggaaactatacgatcgaacaa
ctgaagctgatgcggataaaatttctggtggaatatgggaactga
DBGET
integrated database retrieval system
