Chitinophaga sp. XS-30: FW415_04775
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Entry
FW415_04775 CDS
T06207
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
chit
Chitinophaga sp. XS-30
Brite
KEGG Orthology (KO) [BR:
chit00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
chit03009
]
FW415_04775 (rlmD)
Enzymes [BR:
chit01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
FW415_04775 (rlmD)
Ribosome biogenesis [BR:
chit03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
FW415_04775 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
MTS
Methyltransf_25
Cons_hypoth95
TRAM
Methyltransf_15
UPF0020
TRM5-TYW2_MTfase
N6_N4_Mtase
Methyltransf_12
Methyltransf_11
PrmA
PCMT
Motif
Other DBs
NCBI-ProteinID:
QEH40219
UniProt:
A0A5B9WIV1
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All DBs
Position
complement(1129718..1131127)
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AA seq
469 aa
AA seq
DB search
MRKKNVVLEKVPVTGYAAEGKALARVDGKVIFIEGGVVPGDVVDVRLSKNKKDWAEGKAT
QVHTFSPERTTPFCDHFGLCGGCKWQMLPYEKQMEYKQQQVEDNLQRIGHLEFPAISPIL
GASKTRRYRNKLEFTFSNKAYLTDEEIRAAGEEWPKRNALGFHIPRLFDKVLDIQTCHLQ
EEPANLIKNTVRDWAEQHHLPFYDIRRQEGWLRNLVLRICTTGEVMVNLVIHHELEAERT
ALLDHLLATVPEITTLLYTVNPKKNDSIFDLEPKVYSGKGYVTEKLEDFTFKIGPKSFFQ
TNTYQGEALYKVTRDFAGLTGAEVVYDLYCGTGSIGIFVSRQAKKVIGIELISEAIDDAR
ENASANAVDNATFFAGDVTDICDDAFFAAHGAPDVIITDPPRAGMHEKLTAKLLEVAAPR
IVYVSCNPATQARDLALLNEKYTIEKIQPVDMFPHTHHIENVVLLQRRY
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
gtgaggaaaaaaaacgtagttctggaaaaagttcccgtaacaggctatgctgccgaagga
aaggcattagcacgggtagacggtaaagtgatctttattgaaggtggcgtggtgccggga
gatgtggtggatgtaaggctcagcaagaataaaaaagactgggcggagggaaaagcaacg
caggtgcacaccttttctccggaacggaccactccgttctgcgatcattttggtctttgc
ggtggctgcaaatggcagatgctgccgtatgaaaagcagatggaatacaaacagcagcag
gtggaagacaatctgcagcgtatcgggcacctggaattccccgccatctcccccatcctc
ggcgcatccaaaacacgccgttaccgcaataaactggagttcaccttctccaataaagcc
tatctgacggacgaagagatcagggcggccggagaggagtggcccaaacgcaacgcattg
gggtttcacatacccaggctatttgacaaagtgctggacatacagacctgccatctgcag
gaagagcccgccaatcttatcaagaataccgtacgggactgggcggaacagcatcacctc
cccttctacgacatccgccgccaggaaggctggttgcgcaacctggtgctgcgtatctgc
accaccggcgaggtgatggtaaaccttgtgatccaccacgaactggaagcagagcggaca
gcgttgctggatcatctgctggctaccgttccggagatcacaacattgctgtacaccgtc
aatcccaaaaagaatgatagtatatttgacctggagccaaaagtgtactcgggcaaaggg
tatgtaacggaaaagctggaagactttactttcaagattggcccgaaatcgttcttccag
acaaacacttaccagggggaggcgctgtacaaggttacccgtgattttgccgggctcacc
ggcgctgaggtagtgtatgacctttactgcggtacaggcagcatcggcattttcgtatcc
cggcaggcaaaaaaggtgatcggtatagaactgatcagcgaggctattgacgatgccagg
gagaatgcgtccgccaatgccgtggataacgctacgttttttgcaggggatgtgaccgat
atttgtgatgatgcattctttgccgcgcacggcgctccggacgtgatcattacagacccg
cccagggccggcatgcacgaaaaactgacagccaaactgctggaagtggccgcaccgcgg
atcgtgtacgtcagctgcaaccctgcaacgcaggccagggacctggcattgctgaacgaa
aaatacacgatcgaaaaaatacagccggtagatatgttcccgcatacccaccacatagaa
aatgtagtgctgttgcaacggagatactaa
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