Chitinophaga sp. XS-30: FW415_15315
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Entry
FW415_15315 CDS
T06207
Name
(GenBank) sigma-70 family RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
chit
Chitinophaga sp. XS-30
Pathway
chit02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
chit00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
FW415_15315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
chit03021
]
FW415_15315
Transcription machinery [BR:
chit03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
FW415_15315
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r4
GerE
Sigma70_r2
Sigma70_ECF
HTH_5
HTH_28
HTH_23
DUF722
HTH_10
PF0610-like_N
HTH_11
UPF0122
pPIWI_RE_X
HTH_30
HTH_20
HTH_40
HTH_Tnp_ISL3
DUF7769
HTH_17
HTH_Mga
Phage_antitermQ
HTH_24
Phage_terminase
Motif
Other DBs
NCBI-ProteinID:
QEH42165
LinkDB
All DBs
Position
complement(3744538..3745110)
Genome browser
AA seq
190 aa
AA seq
DB search
MAATSTYNEQELLQMLSQNDSTAFEILYDIYWESLYNTAYKRLQHEEHCKDAVQDVFADL
WTRRKELEIDNLGAYLHTAVRFQVLKLVNRHSTRNTYFDPFETVLISYMNADGKVREKEL
SRIITAWMEELPRKRREIFLLYFEQERTTKEIAAQLNISQKTVQNQLGTAMQSLQAHIAV
HLLFIVSSGI
NT seq
573 nt
NT seq
+upstream
nt +downstream
nt
ttggcagccacatcaacatataacgagcaggaactgctgcaaatgctttctcaaaacgat
tctaccgcatttgagatcctttatgacatatactgggaatcgctttataataccgcctat
aaacggttgcagcatgaggaacattgcaaggatgcagtgcaggatgtattcgccgatctg
tggaccaggagaaaggaactggagatcgacaaccttggcgcctatctccataccgccgtc
cgcttccaggtattgaaactcgttaaccgtcacagcaccaggaatacctatttcgatcct
tttgaaacagtattgatctcctatatgaatgcggatggcaaagtgcgggaaaaggaactg
tcccgcatcataaccgcctggatggaagaactgccccgtaaacgccgtgaaatattcctg
ctttatttcgagcaggagcgcactacaaaagagatcgccgcccagctgaacatctcccag
aaaaccgttcagaatcaattgggaaccgccatgcaaagcctccaggcacatatcgcggtc
cacctgctctttatcgtctcctccggtatctga
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