KEGG   Chitinophaga sp. XS-30: FW415_17300
Entry
FW415_17300       CDS       T06207                                 
Name
(GenBank) RNA polymerase sigma-70 factor
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
chit  Chitinophaga sp. XS-30
Pathway
chit02020  Two-component system
Brite
KEGG Orthology (KO) [BR:chit00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    FW415_17300
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:chit03021]
    FW415_17300
Transcription machinery [BR:chit03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     FW415_17300
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_r4 Sigma70_ECF HTH_23 PhyR_sigma-like GerE HTH_28 HTH_40 HTH_10 Xre-like-HTH
Other DBs
NCBI-ProteinID: QEH42534
LinkDB
Position
complement(4247539..4248165)
AA seq 208 aa
MIENNSHIKELQLQIARYENEQAFADLFRLLYDRLLRFCIQYVQSPEAAEEIVSDVFVKI
WNRRAELMQVENLEVYLFVAVKNHSLNYLEQYSTLRITPIDNGLAELSTSLDPEKEMEWK
EMLLKLDIEVNRLPDQCRKVFRLIREEGFKYRDVAAILNISPRTVETQLFRAIRRLNEAI
GHYRPKKARPGKMEPPFLILLSLLPFFY
NT seq 627 nt   +upstreamnt  +downstreamnt
atgatagagaataattcgcacataaaggagttgcaactgcaaattgcacgttacgaaaat
gagcaggcgtttgccgacctgttccggcttttgtatgaccgcctgctccgtttttgcatt
cagtatgtgcaatccccggaagccgccgaagagatcgtatccgatgtatttgtgaagata
tggaatcgccgtgctgaattgatgcaggtggagaatctggaggtttatctctttgtagcc
gtcaaaaatcattcgctcaattaccttgaacaatattccaccttacgcatcaccccgatc
gataacgggcttgccgagctgagcacttccctggatccggaaaaggagatggaatggaag
gaaatgctcctgaagctggatatcgaagtgaaccgtctgccggaccaatgccggaaagta
ttccggcttatccgggaggagggttttaaataccgggatgtagccgctatcctcaatatt
tctccccgtacggtagagacccagctgttccgcgccatccggcggctgaatgaggcgatc
ggtcattaccggcccaaaaaagcccggcccgggaagatggagccgccattcctgatattg
ctctccctgctgcctttcttctactga

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