Chitinophaga sp. XS-30: FW415_17300
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Entry
FW415_17300 CDS
T06207
Name
(GenBank) RNA polymerase sigma-70 factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
chit
Chitinophaga sp. XS-30
Pathway
chit02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
chit00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
FW415_17300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
chit03021
]
FW415_17300
Transcription machinery [BR:
chit03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
FW415_17300
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
Sigma70_ECF
HTH_23
PhyR_sigma-like
GerE
HTH_28
HTH_40
HTH_10
Xre-like-HTH
Motif
Other DBs
NCBI-ProteinID:
QEH42534
LinkDB
All DBs
Position
complement(4247539..4248165)
Genome browser
AA seq
208 aa
AA seq
DB search
MIENNSHIKELQLQIARYENEQAFADLFRLLYDRLLRFCIQYVQSPEAAEEIVSDVFVKI
WNRRAELMQVENLEVYLFVAVKNHSLNYLEQYSTLRITPIDNGLAELSTSLDPEKEMEWK
EMLLKLDIEVNRLPDQCRKVFRLIREEGFKYRDVAAILNISPRTVETQLFRAIRRLNEAI
GHYRPKKARPGKMEPPFLILLSLLPFFY
NT seq
627 nt
NT seq
+upstream
nt +downstream
nt
atgatagagaataattcgcacataaaggagttgcaactgcaaattgcacgttacgaaaat
gagcaggcgtttgccgacctgttccggcttttgtatgaccgcctgctccgtttttgcatt
cagtatgtgcaatccccggaagccgccgaagagatcgtatccgatgtatttgtgaagata
tggaatcgccgtgctgaattgatgcaggtggagaatctggaggtttatctctttgtagcc
gtcaaaaatcattcgctcaattaccttgaacaatattccaccttacgcatcaccccgatc
gataacgggcttgccgagctgagcacttccctggatccggaaaaggagatggaatggaag
gaaatgctcctgaagctggatatcgaagtgaaccgtctgccggaccaatgccggaaagta
ttccggcttatccgggaggagggttttaaataccgggatgtagccgctatcctcaatatt
tctccccgtacggtagagacccagctgttccgcgccatccggcggctgaatgaggcgatc
ggtcattaccggcccaaaaaagcccggcccgggaagatggagccgccattcctgatattg
ctctccctgctgcctttcttctactga
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integrated database retrieval system