Chitinophaga sp. XS-30: FW415_18670
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Entry
FW415_18670 CDS
T06207
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
chit
Chitinophaga sp. XS-30
Pathway
chit03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chit00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FW415_18670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chit03019
]
FW415_18670
03009 Ribosome biogenesis [BR:
chit03009
]
FW415_18670
Enzymes [BR:
chit01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FW415_18670
Messenger RNA biogenesis [BR:
chit03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FW415_18670
Ribosome biogenesis [BR:
chit03009
]
Prokaryotic type
rRNA helicases
FW415_18670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-ProteinID:
QEH42784
UniProt:
A0A5B9WQT0
LinkDB
All DBs
Position
complement(4619427..4621172)
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AA seq
581 aa
AA seq
DB search
MTTFESLGLQETLLKAVTDLGFVNPTPIQEKAIPVLLGGDRDFVGLAQTGTGKTAAFGLP
LLHQLDMKIRQPQSLILCPTRELCLQITNDLKNFSKYLGDISIVAVYGGTAIGLQLRELK
RGAHIVVATPGRLLDIIERGAINFDNVRYAILDEADEMLNMGFQEDINSILSNTPQEKTT
WLFSATMPAEVRRIAQKYMDDPFELTVGSKNSGNVNIEHEYYVVRPRDKYAALKRIVDFN
PEIFGIIFTRTKIESQEIAESLIKDGYNADALHGDLTQQQRDKVMKRFREKSIQVLVATD
VAARGIDVDNVTHVINYELPDDVENYTHRSGRTARAGKSGISIAIISGRDIGKIRQIERV
LGKKFVKAEVPDGFAVCEKQLFALVHKVHNVEVNEEQIDPYMTRIYEEFADLTKEDLIRR
FASLEFNEFLAYYQDAPDLNVKEDRRGDENSMRTRSSGKFTRLFINLGSVDNFTRGDMLR
FLCDSTGLRGNKIGRIDLKGVYSFFEVENDVVEKVQQSFKKLDYNGRSVRIETSQDGDKR
KSRTFSGDAPRKKTWSGSEDGGFRPRREFSKAGSGSFRSKR
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atgacaacatttgaatcattaggacttcaggaaactttgctgaaagcagtcacagacctc
ggctttgtgaatcctacccccatccaggaaaaagctatcccggtgctgctcggcggcgac
cgtgattttgtgggcctggcacaaaccggtaccggtaaaaccgcagccttcggcctgcca
ttacttcaccagctggatatgaagatccgccagccgcagagccttattctctgccctacg
cgggaattatgtctccagatcaccaacgacctcaagaatttttccaaatatctcggggac
atcagcatcgtagcggtctacggtggtaccgccatcggcctgcaattacgtgagctgaaa
cgcggcgcccacattgtggtagctactcccggccgcctgctggatatcatcgagcgtggc
gccatcaacttcgacaatgtgcgttatgccatcctggatgaagcggatgaaatgctgaac
atgggcttccaggaggatatcaacagcatcctctccaatacgcctcaggaaaagaccacc
tggttgttctccgcgactatgccggcagaagtacgccgtatcgcccagaaatacatggac
gatcctttcgaactgaccgtaggcagcaagaacagcggcaacgtcaacatcgaacatgaa
tactacgtggtacgcccccgtgataaatatgctgcgctgaaacgtatcgtggacttcaat
cccgagatattcggcatcatcttcacccgtaccaaaattgaatcgcaggagatcgcggaa
tcgctgatcaaggacggctataatgcagatgccctgcatggcgacctcacccagcagcag
cgtgacaaagtgatgaaacggttccgggaaaaatcgatccaggtgctggtagccaccgat
gtggccgcccgtggtattgatgtggacaatgtaacgcatgtgatcaactacgaactgccg
gatgatgtggagaactacacccaccgtagcggccgtaccgcccgcgccggcaaatccggt
atttccatcgctattatcagtggcagggatatcggaaagatccgccagatcgagcgcgtg
ctcggtaaaaaattcgtgaaagcagaagtgccggacggatttgccgtttgcgaaaaacag
ctttttgccctggtgcataaagtacataacgtggaagtgaacgaagagcagatcgatcct
tatatgacacgcatatacgaagagtttgcggacctgaccaaggaagacctgatccgccgc
ttcgcttccctcgaattcaacgaattcctggcatactaccaggatgccccggacctgaat
gtgaaggaagaccgccgtggtgacgaaaactccatgcgcacccgcagctccggcaagttc
acccgcctgttcatcaacctcggttccgtggacaactttacccgtggcgacatgttgcgc
ttcctgtgcgacagcaccggtctgcgtggcaacaagatcggccgtattgatctgaaaggc
gtgtattccttctttgaggtggaaaacgatgtggtggaaaaagttcagcagagcttcaaa
aagctggattacaacggccgttccgtaagaattgagacctcccaggatggtgataaacgc
aaatcccgcacctttagcggcgatgctccccgcaagaaaacatggtctggcagcgaagat
ggaggtttccgtccccgccgcgagttttccaaagcaggcagcggcagcttcagaagcaag
cgataa
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