KEGG   Chitinophaga sp. XS-30: FW415_20130
Entry
FW415_20130       CDS       T06207                                 
Name
(GenBank) RNA polymerase sigma-70 factor
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
chit  Chitinophaga sp. XS-30
Pathway
chit02020  Two-component system
Brite
KEGG Orthology (KO) [BR:chit00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    FW415_20130
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:chit03021]
    FW415_20130
Transcription machinery [BR:chit03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     FW415_20130
SSDB
Motif
Pfam: Sigma70_r2 Sigma70_r4_2 Sigma70_r4 Sigma70_ECF GerE HTH_23 HTH_10 HTH_24 HTH_7 Terminase_5 UPF0122 HTH_5 HTH_40 HTH_29 HTH_11 PhyR_sigma-like HTH_38 Herpes_U44 Fe_dep_repress HTH_28 HTH_20 DUF3232 CIM1 HTH_3 DUF1492 Phage_antitermQ TYW2_N_2
Other DBs
NCBI-ProteinID: QEH43052
LinkDB
Position
complement(4986518..4987090)
AA seq 190 aa
MNEQALVQQLISGDPAAFRTLYERYAPRLAAFTIKFQASSAETDEIVQETFIRTWVHRQR
IDPSLPFEAYIITIAKNLIYNHLRKTGHRQNYLREVSLQSGLRQEDPAVQIRELQELIGK
AMQQLPEKCRMVFRKSRLEGYTNAQIAEEMDISRSTVENQLNKALKIIRKNLESHGYGGA
LVTIALIIFK
NT seq 573 nt   +upstreamnt  +downstreamnt
atgaacgaacaggcgcttgtgcagcaactcatttcgggcgatcccgcagccttccgtacg
ctttacgagcggtacgccccgcgcctcgcagcttttaccataaaattccaggccagcagc
gcggaaacggacgagatcgttcaggaaacatttatccgtacctgggtgcatcgccaacgt
atcgacccgtcactgcctttcgaagcctatatcattaccatcgccaaaaatctcatttac
aaccatttgcgtaaaacaggccaccggcagaactatctccgggaagtcagcctgcagtcc
ggcctccggcaggaagacccggcagtgcagataagggaattgcaggaactgatcggcaag
gctatgcagcaactgccggaaaaatgccggatggtgttccgcaaaagccggctggaagga
tataccaatgcacagatagcggaagaaatggatatttcccgcagcacggtggaaaaccag
ctgaataaagcattgaagatcatacgaaagaacctggaaagtcatggttacggcggtgca
ctggtaaccatcgcgctcatcattttcaaataa

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