Chitinophaga sp. XS-30: FW415_21425
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Entry
FW415_21425 CDS
T06207
Name
(GenBank) sigma-70 family RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
chit
Chitinophaga sp. XS-30
Pathway
chit02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
chit00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
FW415_21425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
chit03021
]
FW415_21425
Transcription machinery [BR:
chit03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
FW415_21425
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4_2
Sigma70_r4
TPR_INTS8_3
Sigma70_ECF
LRIM1_dimer
HTH_16
DUF722
Motif
Other DBs
NCBI-ProteinID:
QEH43284
LinkDB
All DBs
Position
complement(5333234..5333827)
Genome browser
AA seq
197 aa
AA seq
DB search
MQQSDIETDWFARIANDDEQAFRQVFDHYWPQVYGTSLHLTKNPEQAKDLSQEIFIKLWE
NRSKLRDVKNPASYLYILSKNLVLDHLRKRVFDPSNIEFLIQYFQVTTQTPQEKLELNEL
KAVMEQAVNSLTGKVKDVFALSRQHGLTHEQIAAQLSISVVSSKTYVVRALQQIRKYMET
HAGDRLVIAALAVVSLR
NT seq
594 nt
NT seq
+upstream
nt +downstream
nt
atgcaacaaagtgatattgaaacagactggtttgcaaggattgcaaatgatgacgaacag
gctttccggcaggtttttgatcactattggccccaggtatatggtacgagtttacacctg
acaaaaaatccggagcaggcaaaagatctttcccaggagatatttatcaagctctgggaa
aaccgctcgaaactcagggacgtgaagaatcccgcttcctacctctacattttatcgaaa
aatctggtgttggatcatttgcggaaaagggtgtttgatccgtccaatattgaatttctg
atacagtattttcaggtcactacacaaacgccgcaggaaaagctggagctgaatgagctg
aaggctgttatggaacaggccgtcaactccctgaccggtaaagtaaaagatgtgtttgca
ttaagcaggcaacacgggctcacccacgaacagattgcagcgcagctgagtatttcagta
gtctcttccaaaacctatgtggtacgcgccctgcagcaaatccggaaatatatggaaacc
catgcgggggatcgcctcgttattgcagcgttggctgttgtgtcgcttcgctga
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