Chitinophaga sp. XS-30: FW415_21510
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Entry
FW415_21510 CDS
T06207
Name
(GenBank) sigma-70 family RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
chit
Chitinophaga sp. XS-30
Pathway
chit02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
chit00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
FW415_21510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
chit03021
]
FW415_21510
Transcription machinery [BR:
chit03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
FW415_21510
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4_2
Sigma70_ECF
Sigma70_r4
HTH_23
HTH_17
HTH_30
HTH_DeoR
HTH_24
MerR
HTH_1
HTH_28
HTH_8
HTH_AsnC-type
Peptidase_C1_2
Motif
Other DBs
NCBI-ProteinID:
QEH43299
LinkDB
All DBs
Position
complement(5357274..5357939)
Genome browser
AA seq
221 aa
AA seq
DB search
MPRSGKCLQFYDNLFLVCGTEGLNGHLHKRDLHNEQQLIRLFRDGDSEAATELYGRFYKG
LVYFARKIVGHAGEAEDIAQDSMVKLFGKQNDFNNLSDIKSFLYVSVRNACFNYLKARDR
HELSHQELRYLTPEGEETADLEMLKSRVLTEIYQEVAALPTQCGEVFRLIFIRKLSTAEA
AERLGISPQTVLNQKARAIRLLRYRLSEKGFLTLLLLMKLL
NT seq
666 nt
NT seq
+upstream
nt +downstream
nt
atgccccggtcagggaaatgccttcagttttatgacaatttatttttagtttgcggaacg
gagggattaaacggacatttgcataagagggacctacataatgagcaacaactgataagg
ctgttccgggatggggacagcgaggcggcaacggaactatacggaaggttttacaagggc
ctggtgtatttcgcgcgcaagatcgttgggcatgccggagaagccgaggatattgcgcag
gacagcatggtgaaactgttcggcaagcagaacgactttaacaacttgtcggatatcaaa
tcttttttatacgttagcgttcgcaacgcctgcttcaattatttaaaggcacgcgaccgg
cacgaactgtcgcatcaggagctgcgctacctgaccccggaaggagaggagaccgcggac
ctggaaatgctgaagtcgagagtgctgaccgaaatttaccaggaggtggctgccttgccc
acccaatgcggcgaagttttccggcttattttcattcgcaagctcagtaccgccgaagcg
gcggaaaggctgggcatttcccctcaaaccgtcctgaatcaaaaggccagagccatcagg
ttattacgttaccggctttccgaaaagggcttcctgactttactcctgctgatgaaattg
ctatag
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