Chitinophaga sp. XS-30: FW415_21810
Help
Entry
FW415_21810 CDS
T06207
Name
(GenBank) sigma-70 family RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
chit
Chitinophaga sp. XS-30
Pathway
chit02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
chit00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
FW415_21810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
chit03021
]
FW415_21810
Transcription machinery [BR:
chit03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
FW415_21810
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r4
Sigma70_ECF
GerE
UPF0122
HTH_23
Sigma70_r2
Phage_antitermQ
HTH_11
Terminase_5
HTH_DeoR
HTH_17
HTH_Mga
DUF1804
DUF722
TFIIE-A_C
HTH_Tnp_ISL3
HTH_28
HTH_10
Motif
Other DBs
NCBI-ProteinID:
QEH43352
LinkDB
All DBs
Position
5454062..5454646
Genome browser
AA seq
194 aa
AA seq
DB search
MANDALHTDHELISQMAAGGENAFTQLYQRHWQKLYLTACKKIQDKDAAREIIHDIFLDL
WKRRQELAVANLPAYLHKALHYRIINRIVSKKDLFFFEILESSGKSLYEADQALLAKDFT
ALIATWVEALPERRRQIFVRYYFQHLTTKEIAESLQISTKTVQNQLNISVQFLRARFGHL
LSLLIMLEEISRQK
NT seq
585 nt
NT seq
+upstream
nt +downstream
nt
gtggcaaacgacgctctccataccgaccatgaactgatcagccagatggcagctggtggg
gaaaatgcgttcacacaactttatcaaagacactggcagaaactttacctcaccgcctgc
aaaaaaatacaggataaagatgctgcccgggaaatcattcacgatatcttcctggatctc
tggaaacgccgtcaggagctggccgtagccaatcttcctgcgtatcttcacaaagccctt
cactaccgcatcatcaacaggatcgtcagcaaaaaagacctgttctttttcgagatactc
gaaagttccggcaaatccctctacgaagcagaccaggcgctgctggctaaggacttcacg
gcgcttatcgccacctgggtggaagcgctcccggaaagaaggcgccagatcttcgtccgt
tactacttccagcatctcaccacgaaagaaatagcggaaagtctgcagatttccactaaa
accgttcagaatcagctgaatatatctgtacaattcctccgcgcccgcttcggccatctc
ctttccctgctgatcatgctggaagagatctcccgccaaaaataa
DBGET
integrated database retrieval system
