| Entry |
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| Symbol |
rpoC
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| Name |
(GenBank) DNA-directed RNA polymerase subunit beta'
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| KO |
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| Organism |
chit Chitinophaga sp. XS-30
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:chit00001]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FW415_22095 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:chit03021]
FW415_22095 (rpoC)
03400 DNA repair and recombination proteins [BR:chit03400]
FW415_22095 (rpoC)
Enzymes [BR:chit01000]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FW415_22095 (rpoC)
Transcription machinery [BR:chit03021]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FW415_22095 (rpoC)
DNA repair and recombination proteins [BR:chit03400]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FW415_22095 (rpoC)
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
complement(5527036..5531331)
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| AA seq |
1431 aa
MAIKKENRPKSNFSSITISLASPDTILERSYGEVLKPETINYRTYKPERDGLFCERIFGP
VKDYECYCGKYKRIRYKGIVCDRCGVEVTEKKVRRERMGHIRLVVPVVHIWYFKSLPNKI
GYLLGMSSKKLETIVYYERYVIIQSGVKQEKGLNYGDLLTEEEYLDILDTLPKDNQLLPD
EDPNKFIAKMGAEAVEMMLARIDLDGLSYQLRNQAATETSQQRKAEALKRLSVVEAFREA
NGRVDNRPEWMVMQYIPVVPPELRPLVPLDGGRFASSDLNDLYRRVIIRNNRLKRLIEIK
APEVILRNEKRMLQEAVDSLFDNSRKSNAVKAEGGRALKSLSDVLKGKQGRFRQNLLGKR
VDYSGRSVIVVGPELKLHECGLPKDMAAELFKPFIIRKLIERGIVKTVKSAKKLVDRKEA
VVWDILENVLKGHPVMLNRAPTLHRLSIQAFQPRLIEGKAIQLHPLVCSAFNADFDGDQM
AVHVPLSNAAILEAQLLMLSSHNILNPQNGTPITLPSQDMVLGLYYISKGKKSTETEIVK
GEGKAFYSAEEVIIAHNEGRVDLHAQIRVKADLRKADGTLERKLIETTVGRVIFNQFVPR
EAGFVNALLTKKSLREIIGDIIKATDIPKTAKFLDDIKTLGFRTAFRGGLSFNINDLIIP
DAKQLMIDGASGEVDEVWDNYNMGLITNNERYNQIIDIWSRVDTKVTETLIRELATDKQG
FNSVYMMLDSGARGSKQQIKQLAGLRGLMAKPRKSGSSGSEIIENPILSNFKDGLNVLEY
FISTHGARKGLADTALKTADAGYLTRRLVDVAQDVVITEEDCGTLRGIATSALKDNEEVV
EPLYDRILGRTSLHDVFDPLSEELIVAAGQQITEEIAKHIEDSTIETVEIRSVLTCESRR
GVCVRCYGKNLATGYTAQRGDAVGIIAAQSIGEPGTQLTLRTFHVGGVAGSASVESTLNA
KFDGTVQFDGLRTTTYENNEGEKVQVVIGRTGELRIMDVKNDRLLITNNVPYGSTLNVKD
GQKVTKGDVICTWDPFNAVIVSEIAGKIRFDSIVEGITYREEADEQTGHREKVVIETKDK
NKIPSLILDGNKESKSYNLPVGSHIVIEEGETVKAGQVIVKIPRVIGKLRDITGGLPRVT
ELFEARNPSNPAIVSEIDGVVAFGNIKRGNREIIIESRESQIKKYLVPLTRHILVQDGDF
VKAGTALSDGSITPADILSIKGPFAVQEYLVNEIQEVYRLQGVKINDKHIEVIVRQMMRK
VTIEDPGDTRFLEGDTTDKFEFFEENDNIFDKKVVTEEGESANLKAGQIVTLRQVREENS
LLRRSDKKLVEYRDANPATSSPLLLGITKASLGTHSWISAASFQETTKVLSSAAINGKTD
DMLGLKENVITGHLIPAGTGLREFENMIVGSKEEYDILASSKEVFQFDEEE |
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| NT seq |
4296 nt +upstreamnt +downstreamnt
atggccatcaagaaagaaaatcgtcccaaatcaaattttagcagcatcaccatcagtctc
gcttctccggataccatcctggagcgttcttatggagaggtgctgaaacccgaaaccatc
aactaccgtacttacaagccggaacgtgatggtttgttctgcgaaaggatattcggtccc
gttaaggactacgaatgttactgcggaaaatacaagcgtatccgttataaaggcattgtg
tgcgaccgttgtggtgttgaagtgaccgagaagaaagtgcgtcgtgaaagaatggggcat
attcgtctggtagtgcctgttgtacatatttggtatttcaaatcattacccaataagatc
ggttacctgcttggcatgtcgtccaagaaactggaaacgatcgtgtattatgaaagatac
gtgatcatccagagcggcgtgaaacaggaaaaggggctgaattacggtgatctgctgaca
gaagaagagtatctggatatcctggacacgcttccgaaagacaatcagctgttgccggat
gaagatcccaacaagttcatcgctaaaatgggcgctgaagcagtagagatgatgctggca
cgtatcgaccttgacggtctttcttaccagctccgtaaccaggctgccacagaaacatcc
cagcaacgtaaagccgaggcgctgaaacgccttagtgttgtggaagcgttccgcgaagcc
aacggccgtgtggataaccgtcccgaatggatggtgatgcaatatatccccgtggtaccg
ccggaattacgtccgcttgtgcctttggacggcggccgttttgcatcttccgatctgaac
gacctgtaccgccgggtgatcatccgtaacaatcgtctcaaacgcctgatcgagatcaag
gcacctgaggtgatcctgcgaaatgagaaacgtatgttgcaggaagcggtggattccctg
ttcgacaactccaggaagtccaatgccgtgaaagcagaaggcggccgcgccctcaaatcc
ctctcggatgtgctgaaaggcaagcagggccgtttccgtcagaacctcctcggtaaacgt
gtggactactccggccgttccgtgatcgtggtaggccccgaactgaagctgcatgaatgc
ggtctgcctaaagacatggctgcggaactgttcaaaccgttcatcatccgcaagctcatc
gaaagaggcattgtaaaaacagttaaatcagctaaaaagctcgtagatagaaaagaagcc
gtggtttgggatatcctggagaatgtgctgaaaggccacccggtaatgctcaaccgtgcg
ccgaccctccaccgtctgtccatccaggccttccagccgaggctgatagaaggtaaggcg
atacagctgcacccgctcgtgtgctctgcgttcaacgcggactttgacggtgaccagatg
gcggtacacgtgcctttgagcaacgccgcgatcctggaagcccagctgctgatgctgtct
tcccacaacatcctcaacccgcagaacggtacgccgatcaccctgccttcacaggacatg
gtactcggtctttactacatctccaagggtaaaaaatctaccgagacggaaattgtgaaa
ggagagggcaaagccttctactccgcagaagaagtgatcatcgcgcataatgaaggccgt
gtggacctgcacgcgcaaatccgcgtaaaagcagatctgcgcaaggctgacggtacactg
gaacgcaagctgatcgaaacaacggtaggccgtgtgatcttcaaccagttcgttcccagg
gaagcaggttttgtaaacgcgctgctgaccaagaaatcactgcgggagatcatcggagac
attattaaagctacagacattccgaaaacagcgaagttcctggacgatatcaagaccctt
ggtttccgtacagccttccgcggcggtctgtccttcaatatcaatgacctgatcatcccc
gatgcgaagcaactcatgatcgacggtgcttccggtgaggtagatgaagtgtgggataac
tacaacatgggtctgatcaccaacaacgagcgctataaccagatcatcgacatctggagc
cgtgtggataccaaagtaacggaaacactgatccgtgaactggctaccgacaagcagggc
ttcaactccgtgtacatgatgctggactccggcgcccgtggttccaaacagcagatcaaa
cagctggccggtctgagaggtttgatggcgaaaccgcgtaaaagcggttcctccggttcc
gagatcatcgagaaccccatcctttccaacttcaaggacggtctgaacgtactggaatac
ttcatctctacgcacggtgcccgtaagggtcttgcggatacggcactgaaaacggcggat
gcgggttacctgacccgtcgtctcgttgacgtggcgcaggatgtagtgatcacagaagag
gattgcggcacactccgcggtattgcaacttcagcgctgaaagacaacgaggaagtggta
gaaccgctgtacgaccgtatcctgggccgtacttccctgcacgatgtattcgatccgctc
tccgaagagctgatcgttgcagccggtcagcagatcacggaagaaattgcgaaacatatc
gaagacagcacgatagaaaccgtagagatccgttccgtactcacctgcgaaagccgcaga
ggcgtttgcgtaaggtgttacggcaagaacctggctaccgggtacactgcacagcggggt
gatgccgtaggtatcatcgcagcgcagtccatcggtgaaccgggtacacagctgacactc
cgtaccttccacgtaggtggtgtggccggctctgcttccgtagagtctaccctcaacgcc
aagttcgacggtaccgttcagttcgacggtctccgtaccacgacttacgaaaataacgaa
ggcgagaaagtacaggtggttatcggccgtaccggtgagctcaggatcatggatgtgaag
aacgaccgcctgctgatcaccaacaacgtaccttatggttctacgctgaacgtgaaagac
ggacagaaggtgaccaaaggcgatgtgatctgcacatgggatccgttcaacgccgttatc
gtttcagagatcgccggcaagatccggttcgacagcatcgtggaaggtatcacctaccgc
gaagaagctgacgagcagaccggtcaccgcgagaaagtggttatcgaaacaaaagacaag
aacaagataccttcccttatcctcgacgggaacaaggaaagcaaatcatacaaccttccg
gttggctcgcacatcgtgattgaagaaggcgaaaccgtgaaagcgggacaggtgatcgtg
aagatcccccgcgtgatcggcaagctgcgtgacatcaccggtggtctgccccgtgttacc
gagctgtttgaagcccgtaacccgagcaaccccgcgatcgtatccgagatcgatggtgtg
gtagcctttggcaacatcaaacgtggtaaccgcgagatcatcatcgaaagccgcgagagc
cagatcaagaagtacctcgttccgctgacccgccacatcctggtacaggacggcgacttt
gtgaaagcaggtactgcattgtccgacggttccatcaccccggcagatatcctctccatt
aaaggtccgttcgccgtacaggaatacctggtgaacgagatacaggaagtgtaccgcctc
cagggtgtgaagatcaacgacaaacacatcgaagtgatcgtacgccagatgatgcgcaag
gtaaccatcgaagatccgggagatacccgcttcctcgaaggcgataccacggacaagttt
gaattcttcgaagagaacgataatattttcgacaagaaggtagtcactgaagaaggagaa
tccgccaacctgaaagcaggtcagatcgtgaccctccgccaggtgcgtgaagagaattcc
ctgctgcgccggtcggacaagaagctcgtggaataccgcgatgccaatcctgccacctcc
agcccgctgttgctcggtatcaccaaagcatcactgggtacgcacagctggatctccgcc
gcatccttccaggaaaccaccaaagtactgtcttctgcagccatcaacggtaaaacagat
gacatgctcggcctgaaagagaacgtgatcacaggtcacctgatcccggccggtactggt
ctcagagagttcgaaaacatgatcgttggttccaaagaagaatacgatatcctggcatct
tccaaagaggtgttccagttcgatgaagaagaatag |
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