Chitinophaga sp. XS-30: FW415_24560
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Entry
FW415_24560 CDS
T06207
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
chit
Chitinophaga sp. XS-30
Pathway
chit03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chit00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FW415_24560 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chit03019
]
FW415_24560 (rny)
Messenger RNA biogenesis [BR:
chit03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FW415_24560 (rny)
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Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
HDOD
KH_1
KH_KhpA-B
AAA_15
Motif
Other DBs
NCBI-ProteinID:
QEH43843
UniProt:
A0A5B9WTY3
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Position
6094222..6095778
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AA seq
518 aa
AA seq
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MTELIIVGVVALAIGILLGKLIFAKNTQRKIQEAEDQAKRIVAEGQLSAETLKKDKLLEA
KEKYLQMKSEHEKEVLQRNQKISESENRIKQKEQGLNQKTEQLQKQVAENESIKENLGRQ
IELVNIKRSELEKHQEEHIRRLEKVAALSAEEARQQLVESLKEEARSQAMSHIQEIIEDA
KTKANKEAKKIIIQSIQRTAAENTIENAITVFNLESDEIKGQIIGREGRNIRAIEAATGV
DLIVDDTPEAIVLSSFDPLRREIARLSLQRLVQDGRIHPARIEEVVEKTKRQLEEQVMEI
GERTVIELGIHGLHKELVRMVGKMRFRSSYGQNLLMHSKETANLCAVMAAELGLNPKLAK
RAGLLHDIGKVPDEESELSHALLGAKLAEKYGEHPAIVNAIGAHHDEMEMAYVISPIVQA
CDAISGARPGARREIMQSYLQRIKDLENLALAYDGVEKAYAIQAGRELRVIVESEKVTDS
DADRLSFEIANKIQNEMQYPGQIKVTVIRERRAVNVAR
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
atgacagaacttatcatagtgggcgtcgtagctctcgctatcggtatattgcttggaaag
ttgattttcgctaaaaacacccagaggaaaatacaggaagcagaagatcaggccaaaagg
attgttgcagagggccagctttccgccgaaacattaaagaaagacaaactgctggaagcg
aaggagaaatatcttcagatgaaatccgagcacgagaaagaagtactgcagcgtaaccag
aagatctcggaatccgagaaccgcatcaagcaaaaagaacaaggccttaaccagaaaacc
gagcagctccagaaacaggtagcggagaacgaatccatcaaggagaacctcggccgccag
atagaactggtgaacatcaaacgttccgaactggaaaaacaccaggaagagcacatccgc
cgcctggagaaagttgcggccctgtccgccgaagaggcccgccagcaactggtggaaagc
ctgaaagaagaagcccgctcccaggctatgagccacatccaggagatcatcgaggatgcc
aagaccaaagccaacaaggaagccaaaaagatcatcatacaatccatccagcgtaccgcc
gccgaaaacaccatcgagaacgccattaccgtgttcaacctggaaagcgacgagatcaaa
ggccagatcatcggccgggaaggccgtaacatccgtgccattgaagcggctacgggtgtg
gacctgatcgtggacgataccccggaagccatcgtgctttcttccttcgaccccctgcgc
cgcgagatcgcccgcctgagcctgcaacgcctggtacaggacggccgtatccaccccgca
cgtatcgaggaagttgtggaaaagaccaaacgccagctggaagaacaggtgatggaaatc
ggggaaaggaccgtgatagagctgggcatccacggtctgcacaaagaactggtgcgtatg
gtcggcaaaatgcgcttccgctcctcttacggccagaacctgttgatgcactccaaggaa
accgccaacctttgcgccgtgatggccgcggaactgggcctcaatcccaagctcgccaaa
cgcgccggcctcctgcacgatatcggcaaagtgcctgatgaagaatccgaactgagccac
gccctcctcggcgccaagctcgctgaaaaatacggcgaacatcctgccatcgtgaacgcc
atcggcgcacaccacgatgaaatggaaatggcctacgtgatctcccccatcgttcaggcc
tgtgacgccatcagcggcgcccgccccggcgcccgccgcgagatcatgcaaagctacctg
caaaggatcaaagacctggaaaacctcgccctcgcttacgatggcgtggaaaaagcatat
gccatccaggccggccgcgaactgcgcgtgatcgtggaaagcgaaaaagtaaccgacagc
gatgcagaccgcctcagcttcgagatcgccaacaagatccagaacgaaatgcaatatccc
ggacagatcaaagtaaccgttatccgtgaacggagagcggtgaacgttgcccggtaa
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