Chitinibacter bivalviorum: HQ393_09595
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Entry
HQ393_09595 CDS
T06696
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
chiz
Chitinibacter bivalviorum
Brite
KEGG Orthology (KO) [BR:
chiz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
chiz03009
]
HQ393_09595 (rlmD)
Enzymes [BR:
chiz01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
HQ393_09595 (rlmD)
Ribosome biogenesis [BR:
chiz03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
HQ393_09595 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_25
TRM5-TYW2_MTfase
Methyltransf_11
Methyltransf_15
Methyltransf_32
Methyltransf_12
MTS
CMAS
Methyltr_RsmB-F
RrnaAD
Motif
Other DBs
NCBI-ProteinID:
QLG88481
UniProt:
A0A7H9BKD3
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All DBs
Position
2033654..2034964
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AA seq
436 aa
AA seq
DB search
MNNPTAKIESLSHEGHGIAHTEDGKTIFIDGALPFETVSYSSFRKKPTFENAQAISIHND
SFMRVKPKCPHYGVCGGCSLQHMEFGAQVAAKQRVLEDNLQRIGHVTPQAILPAIYGPAW
GYRHRGRLSVKNVVKKGTVLVGFHEKRSSFVADMSECHVLVPHVSAQLPALRELVKGLSI
FDRMPQIELAVGANITVLVFRNMEAINDADFELFKAYADEWKVQIWLQPKGPDTAYPLYP
LDAPALTYTMPEFNIEMPFKPTEFTQVNHGINRVMVERAVKMLDPQPGEKIADMFCGLGN
FTLPIARSGATVLGMEGSQQLVERAFQSAKHNGLDHLTDFTVANLFDMNEEWLEKLGYFD
KMLIDPPRDGAMSLCQAISPEKGPKRIVYVSCSPSTLARDADILVNEKGYTLKTAGIINM
FPHTAHVESIAWFEKE
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaccctacagccaagattgaatctctcagccatgaaggtcatggcattgcgcac
accgaagacggtaaaactatttttatcgatggggcgttgccatttgagacggtgagctac
agtagctttcgcaaaaagcctacctttgagaacgcgcaagcaatcagtatacataatgac
agctttatgcgggtaaaaccaaaatgtccgcattatggcgtctgtggtggctgttcatta
caacatatggagttcggtgcgcaagttgccgctaagcaacgcgtactcgaagataatctg
caacgcatcggtcatgtgacaccgcaagcaattttgcctgcgatttatggcccagcgtgg
ggataccgtcatcgtggccgattatcggtcaaaaacgttgtgaagaaaggcacagtgttg
gttggtttccacgaaaaacgcagtagttttgtcgccgacatgagtgaatgtcatgtgctg
gtgccgcatgtttcagcgcaattgcctgcgctgcgcgaattggtaaaaggcttgtcgatt
ttcgatcggatgccacaaatcgagctggcggtcggagccaatatcacggtattggttttc
cgcaatatggaagcgatcaacgacgccgattttgagctattcaaagcgtatgccgatgag
tggaaagtacaaatctggttgcaaccgaaaggcccggataccgcctacccgctttatcca
ctcgatgcaccggcgctgacttacacgatgcccgaattcaatatcgaaatgccgtttaag
ccgactgaatttacacaggtcaatcacggcattaaccgcgtgatggtcgagcgggcggtc
aaaatgcttgatccgcagccaggtgaaaaaatcgccgatatgttctgtggtttgggtaat
ttcacgctgccgatcgcgcgcagtggtgcgacagtcttgggcatggaaggcagccagcag
ttggtagagcgcgccttccaaagcgccaaacacaatggtcttgatcatctcaccgacttc
acagtcgccaacctgtttgatatgaacgaagaatggctggagaaacttggttatttcgac
aaaatgctgatcgatccgccacgcgatggcgcgatgtctttatgtcaggcgatttcgcca
gaaaaagggccaaaacggattgtgtacgtgtcctgtagcccatcaaccttggcgcgcgat
gctgatattctggtcaatgagaaggggtatacgctcaaaaccgccgggattattaatatg
ttcccacatactgcccatgtggaaagcattgcgtggtttgaaaaagaataa
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