Chitinibacter bivalviorum: HQ393_10970
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Entry
HQ393_10970 CDS
T06696
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
chiz
Chitinibacter bivalviorum
Pathway
chiz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
chiz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HQ393_10970 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
chiz03021
]
HQ393_10970 (rpoC)
03400 DNA repair and recombination proteins [BR:
chiz03400
]
HQ393_10970 (rpoC)
Enzymes [BR:
chiz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HQ393_10970 (rpoC)
Transcription machinery [BR:
chiz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HQ393_10970 (rpoC)
DNA repair and recombination proteins [BR:
chiz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HQ393_10970 (rpoC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QLG88716
UniProt:
A0A7H9BK66
LinkDB
All DBs
Position
complement(2313724..2317947)
Genome browser
AA seq
1407 aa
AA seq
DB search
MKGLLELFKQVAQDEEFDAIKIGLASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLSKVRRERMGHIELASPVAHIWFLKSL
PSRLGMVLDIALRDIERVLYFEAFIVIEPGMTPLQRGQLLTEEDYFAKVEEYGDEFVAMM
GAEAVRELLKSMDVDQEISRLRSELDTTGSETKIKKIAKRLKVLEAFERSGIKPEWMILE
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELRAPEIIVRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKLMALELFKPFIFHKLEVMGLATTIKAAKKMVESQEPVVWDILEDVIREHP
VLLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEA
RTLMLASNNVLAPANGEPIIVPSQDIVLGLYYMTREAKYAKGERLNDDGQRLTIFSDVSE
ALRAYANKDVTLQTRVSIRLKEWFKNEAGEWESKLVRRDTTVGRAILSEILPKGLAFSHI
DKSLKKKEIGKLINASFRRCGLKDTVVFADQLMYTGFSYSTRGGISICVDDMLVPAKKVE
LLAAAQSEVKEIEQQYSSGLVTQGERYNKVVDIWGRAGDQIAKAMMDQLGKEPVTDANGK
QDEQESFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIEMPITTNFREGLTVLQY
FISTHGARKGLADTALKTANSGYLTRRLVDVTQDLVVTEDDCGTKNGVAMKAVVQGGDVV
EALRERILGRVVVKDVVDPSTQETLFEVGALLDEDAVDEIELRGVDEVVVRTPLSCETRY
GLCAKCYGRDLGRGHLVNSGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAANQVEA
KSSGNIAYSSNMRYVTNAKGEPVVIARSAEVMVLDDNGRERETHKVPYGATLAVKDGDVI
KAGAVLGTWDPHSRPIITEYSGTVKFENVEEGMTVVKQVDDVTGLSTLVVIASKAKVTSS
KGLRPLVKLIDEFGNEMKLAGTDTPVTISFQVGSIITVKDGQQVGVGDVLARIPQESAKT
RDITGGLPRVAELFEARSPKDAGMLAEVTGTASFGKDTKGKQRLILTDLEGAAHEYLISK
DKHVMVHDGQVVNRGETIVDGPIDPHDILRLQGIEALARYIVHEVQEVYRLQGVKINDKH
IEVIVRQMLRRVVISDAGDSDFILAEQVERAEVLIANDKLAAEGKELAKFDNILLGITKA
SLSTDSFISAASFQETTRVLTEAAIMGKIDDLRGLKENVIVGRLIPAGTGLAYHKNRKRL
QSKVEALMPFAEVAAEVFAESAGEAAE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggcttactcgaactcttcaagcaagtcgcacaagacgaagaatttgacgcgatt
aaaatcgggctcgcatcgcctgagaaaatccgttcttggtcttttggcgaagtgaagaag
ccagaaaccatcaactatcgtacgttcaagcctgagcgtgatggtctattttgtgctcgt
atttttggcccaattaaagattacgaatgtttgtgcggtaagtacaaacgtctgaaacac
cgtggcgtaatttgtgaaaaatgtggcgttgaagtgactttgtcaaaagtccgtcgcgaa
cgcatgggtcacattgagctggctagcccagtggcgcacatctggttcttgaaatcactg
ccatctcgtttgggtatggtattggatatcgcgttgcgcgatatcgagcgcgtattgtac
ttcgaagcgtttatcgtgatcgaaccaggtatgactccgctgcaacgtggccagttgctc
accgaagaagattacttcgcgaaagtcgaagaatacggtgatgaatttgtggccatgatg
ggtgctgaggcagttcgtgaattgctcaaatccatggatgtggatcaagagatcagtcgc
ttgcgctcagagctcgatacgactggttctgaaaccaagatcaagaaaattgctaaacgc
ttgaaggttttggaagcgtttgagcgttcaggtattaaacctgagtggatgattctggaa
gtgctgccagtattgccaccagaattgcgcccattggtgccgctggatggtggtcgtttc
gcgacttctgacttgaacgatctgtatcgccgagtgattaaccgtaacaaccgcttgaag
cgtttgttggagttgcgtgcgcctgaaatcattgttcgcaatgaaaaacgcatgttgcaa
gaagcggttgactcattgcttgacaatggccgtcgcggtaaagcgatgactggtgctaac
aaacgcccactgaaatctttggctgacatgatcaaaggtaagggtggtcgtttccgtcag
aacttgttgggtaaacgtgtcgattactcaggtcgttcggtgattaccgtaggtcctact
ttgcgtctgcatcagtgcggtctgccaaagttgatggcgctggaattgttcaaaccattc
attttccataaattggaagtgatgggcttggcaaccacgattaaagccgcgaagaaaatg
gttgaaagccaagagcctgtagtttgggatatcttggaagatgtaattcgtgagcatcca
gtactgctcaatcgtgcgccaacgctgcaccgcttgggtattcaagcgtttgaaccgacc
ttgattgaaggtaaggcaattcagttgcacccactcgtttgtgcggcattcaatgccgac
ttcgacggtgaccaaatggccgtgcacgttccattgtcgctggaagcgcaaatggaagcg
cgtactctgatgttggcgtcaaataacgtattggctccagccaatggcgagccaattatc
gttccttcgcaggatatcgtattgggtctgtattacatgacccgcgaagcgaagtacgcc
aaaggtgagcgcctgaatgatgatggtcagcgtttgactattttctctgacgtatcagaa
gctttgcgtgcttacgcaaataaagacgtaacgctgcaaacccgcgtttctatccgcttg
aaagagtggttcaaaaatgaagctggcgagtgggaaagcaaattggtgcgtcgcgatacg
actgttggtcgcgcgatcttgtctgagatcttgcccaaaggcttggcgttctcacacatc
gacaagtcactgaagaaaaaagaaattggtaaattgattaatgcttcattccgccgttgc
ggtttgaaagataccgtcgtattcgcggatcaattgatgtacaccggtttctcgtattcg
actcgtggtggtatttcgatttgcgttgacgacatgttggttcctgcgaaaaaagttgaa
ttgctcgcagcagctcagtctgaagtgaaagagatcgagcagcaatacagctcgggtctg
gtaactcaaggcgaacgttacaacaaggttgtcgatatctggggtcgtgctggtgatcaa
atcgctaaggcgatgatggatcaactgggtaaagagccagtaaccgatgcaaacggcaag
caagatgagcaagagtcgttcaactcaatttacatgatggctgactcaggtgcgcgtggt
tctgcagctcagatccgtcagctggcaggtatgcgtggtctgatggctaagccagacggc
tcgattattgagatgccaattacgacgaacttccgtgaaggtttgacagtactccagtac
ttcatctcaacacacggtgcgcgtaaaggtttggcggatacggcactgaaaacagcaaac
tctggttatctgacacgtcgtttagtcgatgtaactcaagatttggttgtgactgaagat
gattgcggcaccaaaaacggtgtggcaatgaaagccgtcgtacaaggtggtgacgtagtt
gaagccttgcgcgagcgtatcttgggtcgcgtagtagttaaagatgtcgttgatccatct
acacaagaaacgctgttcgaagttggcgcgctgcttgatgaagatgcggttgatgaaatc
gagctgcgtggtgtggatgaagtcgttgttcgtacaccgctgtcgtgcgaaactcgctac
ggtctatgtgcgaaatgttatggccgtgacttgggtcgtggtcacttggtgaatagcggt
gaagcagttggtgttattgcggctcagtcaatcggtgagcctggtacccagctgacaatg
cgtacgttccacatcggtggtgccgcatctcgtgctgctgctgcaaatcaagttgaagct
aaatcaagcggtaatatcgcttatagctcgaatatgcgttatgtaaccaatgccaaaggc
gagccagttgtaatcgctcgttctgctgaagtcatggtattggatgataacggtcgcgag
cgcgaaacgcataaagtgccatatggtgcaacgctggcagtaaaagatggcgatgtaatt
aaggccggtgctgtgttgggtacttgggatcctcactcacgtccgatcattactgagtac
tctggtactgtgaagttcgaaaacgttgaagaaggtatgaccgttgttaaacaagtcgat
gatgtaacgggcttgtctactttggtggttattgcttctaaagcaaaagtgacttcaagc
aaaggtttgcgcccacttgttaagttgatcgatgaatttggtaatgaaatgaaattggct
ggtactgatacaccagtgacgatttccttccaagttggctcgattattacagtgaaagat
ggccagcaagttggtgtcggtgatgtgttggctcgtattccacaagaatcagctaaaact
cgcgatattaccggtggtctgccacgtgttgctgagctgtttgaagctcgctcaccaaaa
gatgcaggtatgttggctgaagtcacaggtactgcaagctttggtaaagacactaaaggt
aagcagcgcttgatcttgaccgatcttgaaggtgcggcgcatgaatatctgatttctaaa
gataagcatgtgatggtgcacgatggtcaagttgttaatcgtggtgaaacgattgtggat
ggcccaattgatccgcatgatatcttgcgtttgcaaggcattgaggctctggcacgttac
atcgttcatgaagtgcaagaggtttatcgcttgcagggcgtaaagattaatgacaaacac
attgaagtaattgttcgtcagatgcttcgtcgtgttgtgatttcagatgctggtgattct
gatttcatcttggctgagcaagtagagcgcgctgaagtattgattgccaacgataaattg
gctgctgaaggtaaagaattggctaagtttgacaatatcttgctgggtattactaaagca
tcgttgtcgactgattcgtttatttctgcggcatcgttccaggaaacaacgcgcgttctg
actgaagcggcaattatgggcaagatcgatgatctgcgtggcttgaaagagaacgtgatt
gttggccgcttgattccagctggtacaggcttggcttaccacaaaaatcgcaaacgtttg
cagagcaaagtagaagctttgatgccatttgcggaagttgcggctgaagtttttgctgaa
tcggcaggtgaggcggcggagtaa
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integrated database retrieval system
