Cardiobacterium hominis: NCTC10426_01047
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Entry
NCTC10426_01047 CDS
T05791
Symbol
apxIB_2
Name
(GenBank) RTX-I toxin determinant B
KO
K11004
ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
Organism
chj
Cardiobacterium hominis
Pathway
chj02010
ABC transporters
chj03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
chj00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
NCTC10426_01047 (apxIB_2)
03070 Bacterial secretion system
NCTC10426_01047 (apxIB_2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
chj02000
]
NCTC10426_01047 (apxIB_2)
02044 Secretion system [BR:
chj02044
]
NCTC10426_01047 (apxIB_2)
Transporters [BR:
chj02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB-BAC subgroup
NCTC10426_01047 (apxIB_2)
Secretion system [BR:
chj02044
]
Type I secretion system
alpha-Hemolysin/cyclolysin transporter
NCTC10426_01047 (apxIB_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
Peptidase_C39
SMC_N
AAA_29
AAA_22
SbcC_Walker_B
AAA_16
AAA_21
AAA_18
NB-ARC
DUF87
Zeta_toxin
nSTAND3
PRK
Motif
Other DBs
NCBI-ProteinID:
VEG77008
LinkDB
All DBs
Position
1:complement(1103469..1105538)
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AA seq
689 aa
AA seq
DB search
MAHVHGVAASGEDLLHRFSANGKDLNQEEWLLAARYLGLKVRAVSRSVSRLHLLALPAVV
WQPDGQHFILARVDDGQFLIQDLAAGKPLLLSLADFAARFSGQLILVASRASILGSLAKF
DFTWFIPAVIKYRRIFLEVLAVSIVLQLFALITPLFFQVVMDKVLVHRGFSTLDVIAVAF
VVVTLFEVVLGGLRSYIFAHTTSRIDVELGARLYRHLLQLPISYFEQRRVGDTVARVREL
EQIRNFLTGQALTSVLDLLFSFIFIAVMWFYSGWLTLIVVVSLPVYAAWSALITPVLRAR
LNEKFARYADNQSFLVESVSALGTIKSMAVEPQMTRRWDKQMASYVQTGFRVTKLATIGQ
QGIQLIQKSVTIATLYFGAKLVIEGKLTVGQLIAFNMLAGQVAAPVIRLAQLWQDFQQVG
ISVARLGDILNTPTENPSSRLNLPEIRGDIAFDHVQFRYRPDGQLVLPDLSVQFRAGEVI
GIVGRSGSGKSTLTKLVQRLYVPEQGRVLIDGNDLALADPAWLRRQVGVVLQENVLMNAS
VRDNIALSDPGMPLERVIQAAQLAGAHDFIMELREGYDTMVGEQGAGLSGGQRQRIAIAR
ALVTNPRILILDEATSALDYESERAIMANMDAICRDRTVLIIAHRLSTVRRAHRIIAMDK
GRIVEEGTHEELLKREQGYYRYLYQLQNG
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atggcgcacgtgcatggggtggcagcgagtggcgaggatttgttgcaccgcttttctgcc
aatggcaaggatttgaatcaggaggagtggttattggcggcgcgttatttgggtttgaag
gtgcgcgccgtttcccgttcggtatccaggttgcatttgctggctttgcctgcggtggtg
tggcagccggacggacagcattttattttggcgcgggtggatgacggacagtttttgatt
caggatttggcggcgggcaagccgcttttgttgtctttggcagattttgccgcgcgcttt
tccgggcagttgattttggtcgcctcgcgtgcctccatcttgggttctctcgccaagttt
gatttcacctggtttattccggcggtgattaagtaccgccggatttttttggaggtgttg
gcggtatcgattgtgttgcagttgttcgcgctgattaccccgctcttttttcaggtagtg
atggacaaggtgctggtgcatcgtggtttcagtacgctcgatgtgattgccgtcgctttt
gtggtggtgacactgtttgaggtggtgctgggcgggctgcgctcttatatttttgcgcat
acgaccagccgcattgatgtggagctgggcgcgcggctttatcgccatttgttgcagttg
ccgattagttattttgagcagcgccgcgttggcgatacggtggcacgggtgcgcgagctg
gagcagattcgcaattttttgactgggcaggcgctgacctcggtgctggatttgctgttt
tctttcatctttatcgcggtgatgtggttttacagcggctggctgacgttgatcgtggtg
gtgtcgctgccggtatatgccgcctggtcggcgctgattacgccggtgttgcgcgcacgg
ctgaacgagaaattcgcccgctatgcggataatcagtcttttttggtggaatcggtgtcg
gcactggggacgataaagtcaatggcagtcgagccgcagatgacgcggcgctgggacaag
cagatggcgagttatgtgcagacgggtttccgcgtgaccaagctcgcgactatcggccag
caagggattcagctcattcagaagtcggtaactatcgctactctttattttggcgcgaag
ctggtgattgaaggcaagctgacggtggggcagttgattgcttttaatatgttggccggg
caggtagcggctccggtgatacggcttgcgcaactgtggcaggattttcagcaggtcggg
atttcggtggcacggcttggtgatattttgaatacgccgacggaaaatccttcttcccgc
cttaatttgccggagattcgtggcgatattgcttttgaccatgtgcagttccgctatcgc
ccggatgggcagttggtattgccggatttgagtgtgcagttccgcgccggtgaggtgatt
ggtattgttggccgttccggttcgggcaagagtacgctgaccaagctggtgcagcggctg
tatgtgccagagcagggacgggtgttgattgacggcaatgatttggcgctggctgatccg
gcttggttacgtcgccaggtgggggtggtgttgcaggagaatgtgctgatgaatgccagc
gtgcgcgacaatatcgccctttctgatccggggatgccgctggagcgggtgattcaggcg
gcgcaattggccggggcacatgatttcatcatggagctgcgcgagggttatgacaccatg
gtcggtgaacagggcgcggggctttccggcgggcagcggcagcgcatcgccatcgcccgc
gcattggtaacgaatccacgtattttgattttggatgaggcgacgagcgcgctggattat
gagtcggaacgcgccatcatggcgaacatggatgccatctgccgcgaccgcaccgtgctg
attatcgcgcaccgcctttctactgtgcgccgggcgcaccgcattattgcgatggacaag
gggcggattgtcgaggaaggcacgcatgaggagctgctcaaacgcgagcaggggtattac
cgctatttgtaccagttgcagaatgggtga
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