Cardiobacterium hominis: NCTC10426_01524
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Entry
NCTC10426_01524 CDS
T05791
Symbol
rpoD
Name
(GenBank) Sigma-70
KO
K03086
RNA polymerase primary sigma factor
Organism
chj
Cardiobacterium hominis
Pathway
chj02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
chj00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
NCTC10426_01524 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
chj03021
]
NCTC10426_01524 (rpoD)
Transcription machinery [BR:
chj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NCTC10426_01524 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
TipAS
Motif
Other DBs
NCBI-ProteinID:
VEG77471
LinkDB
All DBs
Position
1:complement(1601562..1603415)
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AA seq
617 aa
AA seq
DB search
MSDFEQEPEEYDVQDEVKELLARGREQGFLTYEEIHEALPEHALEGDKYDEMIALIVEMG
IDVVESAQEDGGVIATDDEEEVPSAAALNEAEIGRTTDPVRMYMREMGAVDLLTREGEIA
IAKRIEAGLNTVQQTLAEFPFAVSALLEEFAKIEAGEGRLSDLVNGYGDPYANKEEETLL
ESSDDEDSETLISAGDDDEDDDSAAPLEEAPNNQDALLEAKEKLHELAAIHKKLMTALNK
GKSLDDKKNQKLHGEIKEYIAAFSFPQKTIDLMEAQLNVAAEEIRDIERRLMRLVIERAG
MPRKLFIQEFPGNETNPDWIVGQSKQRRKYAEKLKGMITEIQVEQEKYLEIEKRYHMSIL
QLKEIQKRLSMGKNQAKRAKEEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAV
DKFEYRRGFKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRTLVQKNGR
EPTPEELAEAMDMPEEKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSNVMSPLEAAT
TRGLSEATNEVLASLTPREERVLRMRFGIDMNTDHTLEEVGRQFDVTRERIRQIEAKALR
KLRHPNRSELLKSFLND
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atgagtgattttgagcaagagccagaagaatatgacgtccaggacgaagtcaaagaactc
ctcgcccgcgggcgcgaacaaggattcctgacctacgaagaaatccacgaagcgctgccg
gaacacgccctggaaggcgacaaatacgacgaaatgatcgcgctcatcgttgaaatgggc
attgacgtcgtcgaaagcgcgcaagaagacggcggcgtcatcgccaccgacgacgaagaa
gaagtccccagcgcggccgcgctgaacgaagccgaaatcggccgtaccaccgacccggta
cgcatgtacatgcgcgaaatgggcgcggtcgatctcctcacccgcgaaggcgaaatcgcc
atcgccaagcgcatcgaagcggggctgaataccgtgcagcagacactggccgaattcccg
ttcgccgtctccgccctgctcgaagaatttgccaaaatcgaggcgggtgaaggccgtctg
agcgacctcgtcaacggctacggcgacccctacgccaacaaagaagaagaaaccctgctg
gaaagcagcgacgacgaagacagcgaaactctcatcagcgcaggcgatgacgacgaagac
gacgacagcgccgccccgctggaagaagcgccgaacaaccaggacgccctgctcgaagcc
aaagaaaaattgcacgaactcgcggccatccacaaaaaactgatgaccgcgctcaacaaa
ggcaaaagcctggacgacaaaaaaaaccagaaactccacggcgaaatcaaagaatacatc
gccgccttctccttcccgcaaaaaaccatcgacctgatggaagcgcagctgaacgtcgcc
gccgaagaaatccgcgacatcgaacgccgcctgatgcgcctcgtcatcgagcgcgccggc
atgccgcgcaaactcttcatccaggaatttccgggtaacgaaaccaacccggactggatc
gtcggccagagcaaacagcggcgcaaatacgccgaaaaactgaaagggatgatcaccgaa
atccaggtcgaacaagaaaaatacctggaaatcgaaaaacgctaccacatgagcattttg
cagctcaaagaaatccagaaacgcctctccatgggcaaaaaccaggccaagcgcgccaaa
gaagaaatggtcgaggccaacctgcgtctggtcatctccattgcgaaaaaatacaccaac
cgcggcctgcaattcctcgacctcatccaggaaggcaacatcggcctgatgaaagcggtg
gacaaattcgaataccgtcgcggcttcaaattctccacctacgccacctggtggatacgg
caggcgattacccgttccattgctgaccaggcgcgcaccatccgcatcccggtgcacatg
atcgaaaccatcaacaaactgaaccgcatctcgcgcaccctggtacaaaaaaacggacgc
gaaccgacgccggaagaactggcagaagcgatggacatgccggaagaaaaaatccgcaaa
gtgctgaaaatcgccaaagagcccatctcgatggaaaccccgattggcgacgacgaagac
tcgcatctgggcgacttcatcgaagactccaacgtcatgtcgccgctggaagccgcgacc
acgcgcggactgtcggaagccaccaacgaagtcttggcctcgctcaccccgcgcgaagag
cgcgtgctgcgcatgcgcttcggcatcgacatgaacaccgaccacaccctggaagaagtc
ggccgccagtttgacgtcacccgcgagcgcatccgccagatagaggcgaaagcgctgcgc
aaactgcgccatcccaaccgctcggaactgctgaaaagtttcctcaacgactga
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