Chryseolinea soli: D4L85_09390
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Entry
D4L85_09390 CDS
T05641
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
chk
Chryseolinea soli
Pathway
chk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D4L85_09390 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chk03019
]
D4L85_09390 (rnr)
03016 Transfer RNA biogenesis [BR:
chk03016
]
D4L85_09390 (rnr)
Enzymes [BR:
chk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
D4L85_09390 (rnr)
Messenger RNA biogenesis [BR:
chk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
D4L85_09390 (rnr)
Transfer RNA biogenesis [BR:
chk03016
]
Prokaryotic type
tRNA degradation factors
D4L85_09390 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
S1
OB_HELZ2
Rrp44_S1
DUF1918
DUF3527
Motif
Other DBs
NCBI-ProteinID:
AYB30779
UniProt:
A0A385SHV1
LinkDB
All DBs
Position
2159794..2161956
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AA seq
720 aa
AA seq
DB search
MSKSKKKSKDKKSGNKRGVLEAALLAVVDNNMGKPYSFKHLLKKLSLKKKDDIKALGQIL
DDLVENGRLQEDNGAFISNRKQETLTGVLDHVSSRFGYVKLGEDQTDVYIKERDLGSAVD
GDTVTIVIYPTRHGEHPEGKVTSVVKRNRTKFVGKVELSKSFAFVVPDYRKMHTDFFVYP
ENINGAKSGDKVIIEVTSWAENDRKPEAKIVEVLGKAGENEAEIHSIMAEFDLPFKFSEK
VESESKKIDEDITKAEIKKRWDFREITTFTIDPEDAKDFDDALSFRKLDNGLYEIGVHIA
DVTHYVTPNSILDQEAYDRATSVYLVDRTIPMLPERLSNELCSLRPHEDKLTFAAVFEMD
DKGHIKKEWFGRTIIHSDKRFSYEGAQEVLEKGKGELSEELTILNTLAKKLRKDRFSKGA
VNFETTEVKFKLDENGKPLEVIPKVRKDAHKLIEEFMLLANKQVATYVYNMKKGKEKNTF
VYRIHDFPDPEKVKDFSVFARQFGHKMNVDETNISSSLNKLMTEIEGKPEQNVLEQLAIR
TMAKAKYSTDAKGHFGLAFSHYSHFTSPIRRYPDMMVHRLLQHYLDEGKTVNKTEYEAKS
VHSSEREKRAADAERASIKYKQVEFMSTAEKRPYEGLISGVTEWGIYVEIVETKCEGMIR
MADMTDDFYEFDEKNYRITGRKTRKSYTLGDRIQVMVKRTDIDKRLIDLIFAPKVKSTEE
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaatcgaaaaaaaaatcaaaagataaaaaaagcggaaataagcggggagtttta
gaagcggccctcctcgccgtggtagacaacaacatgggcaagccctattcgttcaaacac
ctcctcaaaaaattaagcctcaagaagaaagatgatatcaaggccctcggccaaatcctg
gacgacctcgtagaaaatggccgtctccaggaagacaatggggccttcatcagcaaccgg
aaacaggaaacgctcacgggtgttctggatcacgtgagctcacgctttggctatgtaaag
ctcggggaagaccagaccgacgtctacatcaaagaaagagacctcggctccgcggtggat
ggtgatacggttacgattgtaatatatcctacccgtcatggtgagcaccccgagggcaaa
gtgacctccgtggtaaagcgcaaccggacaaagttcgtagggaaagtggaactgtcgaaa
agttttgccttcgtggtgccggactacagaaagatgcacacagatttctttgtgtatcct
gaaaatatcaacggagcaaaaagcggtgacaaagtgatcatcgaagtcacctcgtgggcg
gaaaatgaccgcaagcccgaagcaaagatcgtggaagtgttgggtaaagccggcgaaaat
gaagcggagatccactccatcatggccgagttcgacctgcctttcaaattttcggaaaag
gtggagagcgaatccaaaaagatcgacgaagacatcaccaaagcagagatcaaaaaacgg
tgggacttccgcgagatcacaaccttcaccatcgaccccgaagatgccaaggactttgac
gatgccctctccttccgcaagctcgacaacgggctctacgagatcggggttcacatcgcc
gatgtaacgcactatgtaacgcccaactccattctggatcaggaggcgtacgatcgtgcc
acttcagtttacctggtggatcggaccattcccatgctgcccgagcgcctgtcgaatgaa
ttgtgctcgctccgtccccacgaagacaagctcacctttgccgccgtttttgaaatggac
gacaaaggccatattaaaaaagaatggttcggtcgcaccatcatccactccgacaagcgc
ttcagctatgaaggcgcccaggaagtattggaaaaaggaaaaggcgaactgtcggaagag
ctgaccatcctgaacacgctggccaaaaagctgcgcaaagatcgcttcagcaaaggcgcc
gtgaactttgagaccaccgaagtaaaattcaagctcgacgaaaatggcaagcccctcgaa
gtaattcccaaagtgcgcaaagatgcgcacaagctcatcgaagagttcatgttgctggcc
aacaaacaagtggccacctatgtgtacaacatgaagaaagggaaagagaagaacaccttt
gtataccggatccacgatttccccgacccggaaaaagtgaaggatttttcggtgtttgcc
cgccagttcggtcacaagatgaacgtggacgagaccaacatctccagctcgttgaacaaa
ctgatgacggagatcgaaggcaagccagagcaaaatgttttggaacaactcgccatccgc
accatggccaaggccaagtactccaccgatgcaaaaggccacttcgggttggcgttcagt
cactactcacacttcacatcgcccatccgccgttatcccgacatgatggtgcaccgcctg
ttgcaacactatctcgacgagggcaagaccgtgaacaaaaccgagtacgaagccaagagc
gtacattcctccgaaagagaaaaacgcgccgccgatgccgaacgtgcatcgatcaaatac
aaacaagtagagttcatgtcgactgccgaaaagagaccctacgaaggattgatctccggc
gttaccgaatggggcatttatgtagagatcgtggaaacaaaatgcgaaggcatgatccgc
atggccgacatgaccgatgacttctacgaattcgatgaaaagaactatcgcatcaccggg
cgtaaaacacgcaagagctatacgctgggcgaccgcatccaggtgatggtgaagcgaacc
gacatcgacaaacgtttgatcgacctgatctttgctccaaaagtaaaatccaccgaagaa
taa
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