Chryseolinea soli: D4L85_33565
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Entry
D4L85_33565 CDS
T05641
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
chk
Chryseolinea soli
Pathway
chk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D4L85_33565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chk03019
]
D4L85_33565
Enzymes [BR:
chk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
D4L85_33565
Messenger RNA biogenesis [BR:
chk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
D4L85_33565
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
CMS1
UvrD-helicase
SUa-2TM
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
AYB35215
UniProt:
A0A385SYQ6
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All DBs
Position
8078281..8079945
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AA seq
554 aa
AA seq
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MSFEKLNLIEPLLRALKAEGYTTPTPIQEQSIPISLERRDLLACAQTGTGKTAAFTLPIL
QLLHQDELFVKGPAGIKALILTPTRELAIQIGESIAAYGKYLRIRHTVIFGGVPQRSQTD
ALRAGVEILVATPGRLLDLMDQRFVKLQNLKVLVLDEADRMLDMGFIHDVKKVIAKVPTQ
RQTLFFSATMPPEIAKLADTILTNPQRVEVTPVSSTANTIQQSVFFVEKRDKKKLLLHLL
KDQTIATALVFARTKHGADRVAKDLNQAGVRAEAIHGNKSQGARQRALSNFKSQHTRVLV
ATDIAARGIDVDDLSTVINYELPNVPETYVHRIGRTGRAGASGVSYSFCDEEEKEYLSDI
HKLIKKTIPVVEDHPYPLLHAGMPKTNAAPAQRQGNQGNQQRRQGPGGGNRSRRPGNQGH
QARPGNARDGGRQGRSTDLPDLNPATDTPRTPRPENKGNAGRPENGRHTGGRPDNRNQGG
RSENKNNGGRSGNGNASPGRHSGKPSSHSSGRPVNANPAKNMDQPAKSNPSDWSSLSDSQ
SDLDWGGGLRLSYE
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgaaaaattaaatctcattgagccccttttgagggctttgaaagcagaaggc
tatacgacacccactcctattcaggagcaatcgatacccatctccctggaacgacgcgat
ctgcttgcctgcgcccaaaccggcaccggcaaaaccgcagcgttcacgctccctattctt
caattgcttcaccaggacgagctcttcgtaaaaggccccgccggcattaaagcattgatc
cttacgcctacgcgcgagctggccatccagatcggcgaaagcatcgccgcctatggcaaa
tacctgcgcatccgccacacggtcatcttcggtggcgtgccccaacgttcccaaaccgac
gccttgcgcgccggtgtggagatcctggtggctacccccggcaggttgctggacctcatg
gaccagcgctttgtgaaactccaaaacctgaaggtgctggttttggatgaagccgaccgc
atgctggacatgggctttatccacgacgtgaagaaagtgatcgccaaggtccccacccaa
cgccaaacgctgttcttctcggccaccatgccccccgaaatcgccaagctggccgacacc
atcctcaccaacccgcagcgcgtggaggtgacaccggtatcgtctacggccaataccatt
cagcaatcggtgttctttgtggagaagcgcgacaaaaagaaattgttgcttcacctctta
aaagaccagaccattgccacggccctcgtgttcgcgcgcaccaaacacggtgccgaccgc
gtggccaaagatctgaatcaagccggcgtccgggcagaagccatacacggaaacaaatcg
cagggcgcacgccaacgcgcgctcagcaactttaagtcgcagcacacgcgcgtactcgtg
gccaccgacatcgccgcccgcggcattgacgtggacgacctgtcgaccgtgatcaactac
gagttgcccaacgttcccgaaacctatgttcaccgcataggccgcacgggacgtgccggt
gcgagtggtgtttcgtattcgttctgcgacgaagaagagaaggaatatcttagcgacatt
cacaagctcatcaagaagaccataccggtggtagaggatcatccctatcccttgctgcat
gccggcatgcccaagacgaacgctgctccggcacaacgtcagggtaaccagggcaatcaa
caacgccgtcaaggtccgggtggaggcaatcgttcacgccgtccgggtaatcaaggtcac
caggcgcgtccgggcaacgcccgggatggaggtcgccagggccggtcaacggaccttccc
gatctgaaccccgcgacggacaccccacggacaccgcgtcctgaaaacaaaggcaacgca
ggtcgtccggagaatggccgccacaccggtggtcgccccgacaatagaaatcaaggcggt
cgttccgaaaataaaaacaacggcggtcgctccgggaatggcaacgccagccctggtcgt
cattcgggaaagccaagcagtcattcttccggtcgtccagtcaatgcaaacccggcgaag
aatatggatcagcctgccaagtcaaacccatcggattggtcaagcctttccgatagccag
tccgatctggattggggtggaggacttcgcctgagctacgaataa
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