Chloroflexus aurantiacus Y-400-fl: Chy400_0292
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Entry
Chy400_0292 CDS
T00859
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
chl
Chloroflexus aurantiacus Y-400-fl
Pathway
chl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Chy400_0292
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
chl03021
]
Chy400_0292
03019 Messenger RNA biogenesis [BR:
chl03019
]
Chy400_0292
Transcription machinery [BR:
chl03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Chy400_0292
Messenger RNA biogenesis [BR:
chl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Chy400_0292
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA
OB_RNB
Mor
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ACM51731
LinkDB
All DBs
Position
354118..355452
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AA seq
444 aa
AA seq
DB search
MTVAELETKTLADLREMARKLDISGISSLKKRELIDKLIQAQTATQTQTITVTEPPALPD
LNPIETTTVDRTSIEFSTIYSDGILDIMAEGFGFLRGNRMLPSPEDVYVSQSQIRRFALR
SGDRIWGQIRPPKESERYYSLLRVEKINDQDPETARKRPFFDQLTPIFPNEQIKLETEPN
LLHTRLVDLIAPIGRGQRGLIVSPPKAGKTMLLKAIANGITTNYPDIILMVLLIGERPEE
VTDMRRSVRGEVISSTFDEPVENHTKVAEMTLERAKRLVEIGHDVVILMDSITRLARAYN
VAMPPSGRTLSGGIDPVALYPPKRFFGAARNIENGGSLTIIATCLIDTGSRMDDVIYEEF
KGTGNMELHLDRKLAEKRIFPAIDIQRSGTRREDLLLSPDTLRQVWTLRRMVSMLGENEG
TELMLTRMAKTKSNAEFLQTLSKS
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atgacagttgctgagcttgaaacaaaaactctcgccgatttacgcgaaatggcgcgtaaa
cttgacatttcagggatcagctcattgaaaaaacgcgagctgatcgataaactaattcaa
gcgcaaacggcaacgcaaacgcagacgataacagttaccgagcctccagcgttaccagat
ctcaatccgatagaaacaacaaccgttgaccgaacttccattgagttcagcacgatatac
agtgatggcatcctggacattatggcagaaggtttcggtttcttacgaggtaatcggatg
ctgccaagtccagaagatgtctatgtctcacaatcgcagattcgtcgctttgccctacgc
agtggagatcggatttgggggcaaattcgtccgccgaaagagagtgagcgctattattca
ttattgcgggttgaaaagattaatgatcaggatccggaaactgcccgcaaacgaccattt
tttgatcaactgacacccatttttcccaacgaacagattaagttagaaactgaaccaaat
ctcttgcatacccgtctggtcgatttgattgccccaatcggtcgtggtcagcgaggctta
atcgtttctcctcccaaagcgggaaagacgatgctgttgaaggcaattgccaacggcatc
acgaccaactatcctgacattattctgatggtcttgttgattggtgagcgcccggaagaa
gtcaccgatatgcgccgttctgtgcgcggcgaggtgatctcttcgacgtttgatgagccg
gtcgaaaatcacaccaaagtggccgagatgacgctggagcgggcgaaacgcctggtagaa
attggacatgatgtggtcattttgatggactcgatcacccgactggccagggcgtacaac
gttgccatgcccccgagtggacgtaccctgtctggtggtatcgacccggttgccctgtat
ccgccaaaacgctttttcggtgctgcccgtaacattgaaaatggtggctcgctaacgatt
atcgccacctgtctaatcgataccggctcacgcatggacgatgtgatctacgaagagttc
aagggcaccggcaacatggaactccaccttgaccggaaactggccgaaaaacgcatcttc
ccggcgattgatattcagcgctccggtacgcgccgcgaggatctcctgctcagccctgac
acgttacgccaggtatggacgttgcggcgaatggtgagcatgctcggtgagaatgaaggt
accgaactgatgctgacccggatggcgaaaaccaaatcgaatgccgagtttttacagacc
cttagtaagagttag
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