Chloroflexus aurantiacus Y-400-fl: Chy400_0576
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Entry
Chy400_0576 CDS
T00859
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
chl
Chloroflexus aurantiacus Y-400-fl
Brite
KEGG Orthology (KO) [BR:
chl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
chl03016
]
Chy400_0576
Enzymes [BR:
chl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Chy400_0576
Transfer RNA biogenesis [BR:
chl03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Chy400_0576
Prokaryotic type
tRNA splicing ligases
Chy400_0576
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ACM52013
LinkDB
All DBs
Position
complement(686723..688039)
Genome browser
AA seq
438 aa
AA seq
DB search
MKAAQLLADYTNHPAFRELCRAAKQMLREGLDPATVRRQIAAQYGEPPVELRLRAQPQPL
KIIGAHLIEPGAIEQMQTALRLPPAIRGALMPDAHQGYALPVGGVIAYDRAVAPYQVGVD
IGCRMHLSIFADMTPDEAHRDRHHLLDTLTKVTVFGIGSPKKPVADHPILADPRWRATKL
LRELHDLATYQIGTSGGGNHFAEIVVGEWLDTHRTFVGLLTHSGSRGVGAKIANYYATLA
DRETAVIASGIPKTYGWLGTDTEAGQEYLLAMRLAGDFARANHEVIHARFARAAGVAVER
VIEHHHNFAWEQPDGTVIHRKGATPAEAGTYGLIPGSMATASYIVEGLGEPTSLASASHG
AGRRFSRSEARRTITPAMAAAVVREAGVLVRGLAVDESPLAYKDIETVMELQVAAGLIRP
VARMRPLVVIMSGSAGED
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcagcccagttgttagccgactataccaatcatccggcatttcgtgagttgtgt
cgggctgctaaacagatgctgcgtgaagggcttgatccggctacggtgcgccggcagatc
gctgcgcagtatggtgagccgccggtggagttacgcctgcgcgctcagccgcagccactc
aagattatcggtgcccatttgatcgagccgggtgcgattgaacagatgcagacggcgctg
cgcttgccacccgcgattcggggagcactcatgcccgatgcccatcagggctatgcgctg
ccggtcggtggcgtgatcgcgtatgaccgggcggtggcgccgtaccaggtcggtgtggat
attggctgccggatgcatctctcgatctttgctgatatgacccccgacgaggcgcatcgt
gatcgtcaccatctgctcgacacgcttacgaaagtcacggtgtttgggatcggctcgccg
aagaagccggttgccgaccatcccattctcgccgatccgcgctggcgggcaacaaaactg
ctccgcgaactgcacgatctggcgacatatcagattggcacatccggtggtgggaaccat
tttgccgagattgtcgtcggtgagtggcttgatacgcaccgcacgtttgttggtttgctc
acccatagcgggagtcgtggtgtcggtgcgaagatcgcgaactactacgcaaccctggcc
gaccgggaaacggcggtgattgccagcggcattccgaagacatatggctggctggggacg
gataccgaagccgggcaggagtatctgctggccatgcgtttggcaggcgattttgcccgt
gccaatcacgaggtcatccatgcccgctttgccagggcggcaggtgttgccgtggagcgg
gtgattgagcaccaccacaattttgcctgggagcagcccgacggaacggttattcaccgc
aaaggcgccactcctgccgaggctggtacctatgggttgatccccggttcgatggcaacc
gccagctacattgtcgaagggttaggcgaaccaacctcgctggccagtgcatcgcacggt
gccggtcggcgcttcagtcgttccgaagctcgccgcacgattaccccggcaatggcagcg
gcagtggtgcgcgaggccggtgtgctggttcgcggtctggccgtcgatgagtcgccactg
gcctacaaggatatcgagacggtgatggagttgcaggttgccgccggcctcattcgcccc
gtggcccggatgcgtccactggtggtgataatgtctggctcggcaggcgaggattaa
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