Chloroflexus aurantiacus Y-400-fl: Chy400_3344
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Entry
Chy400_3344 CDS
T00859
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
chl
Chloroflexus aurantiacus Y-400-fl
Pathway
chl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
chl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Chy400_3344
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
chl03400
]
Chy400_3344
Enzymes [BR:
chl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Chy400_3344
DNA repair and recombination proteins [BR:
chl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Chy400_3344
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
TRCF
ResIII
Cas3-like_C_2
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
ACM54721
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All DBs
Position
4165913..4169470
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AA seq
1185 aa
AA seq
DB search
MVTPLPATFHQLASVQALGKVLADLPGIAALAASLRPGYQTIAPVPAAARPALLAALAYH
RTTPTLYITLSAESALRAADDLRQWLGSDQVWLFPPADALPYEQMSPGRDVLARRLAVLR
GLQTGSFSGVIVTSVKALMQPTLPPSDLANATIRLQRGMQVSIEETVVTLLDNGYQRVAM
VEEPGELSRRGAILDVWPPGDELPLRIEWFDDEIDSLRRFDPATQRSEQRLERADIGPPH
EIPFWRRDEALRRIDALDMSQLRREVRDEWAVAREQLAGGQRFEGRAFYAPFFYDQTATL
LDYLPPQSMVALAEGHLLAQHADEIDVQAAGYRDQLLALGELPPDFPRPYLRWSELHLKE
SAKLVVVDLSHNEYPDALPPLSFGVPPLYGGQLRRLIDTVVEQVRGGELVVAVTAQAARL
QELVGERLAQETVSGRFVPIHGGLEAGFTLADLHLTLLTDSEIFGVRQRRPLAERRRKTG
TTDRAAFLRTLKPGDYVVHIEHGIAIFDGMIRRTVSEVEREYLVLRYAGEDKIYVPVDQI
DRVTRYIGAGDGPPTLTRLGTQDWERTKRKVRAAVQDLAEELLRLYAQRQLKSGYAFSPD
NEWQRELEASFPYLETDDQLRAIAEVKADMEKPTPMDRLVCGDVGFGKTEVALRAAFKAV
QDGKQVAILVPTTVLAQQHFDTFRKRMAAFPVTVEMLSRFRSPKEQDAIIRDLARGKIDI
IIGTHRLLSNDVVFRNLGLVIIDEEQRFGVRHKERLKLMRTEVDVLTLTATPIPRTLHMA
LAGIRDLSVIDTPPEDRIPIKTYVVPTDDHLIQEVIRRELEREGQVYVVHNRVQSIYHVA
ERLRRLVPEARIAVGHGQLAERELEQVMIDFFEGRYDVLVCTTIIESGLDVPNANTIIID
DATNYGLAQLYQLRGRVGRGATRAYAYLLYNAARVMTNDARLRLEAIQEATELGAGFRIA
MRDLEIRGAGNLLGAEQSGHIAAVGFDLYSRLLEQAVRKLKQDVDELAETATDSSVTPAV
MAESLRAPNVSERVLVAPLVTIDLPLTAYLPPDYISDETVRLAVYQRMVDATTLDEVRGL
RQELIDRFGGPLPEPVLHLILWLQIRLLALQAGVASITTEGDVFFIRLSTPLAAGVRERL
RRRFPRDAAIAFGPQSIRLDRRLLGSQWPERLLAVVELLAGYSGT
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
atggtaacaccattgccagcaacattccatcaactcgcaagtgttcaggcactcggcaaa
gtgttggctgacctgccgggcattgcagcgctggcagcgtcgctacgtcctggctatcaa
acgattgcgccagtgccggcggcagcccgtccggcattgcttgctgcgctggcctatcac
cgcacgaccccaaccctctacatcactctcagtgccgagagcgcgctccgtgcagccgac
gatctccggcagtggttagggtcggatcaggtctggctcttccctcccgccgatgcattg
ccatacgagcagatgtctcccggtcgcgatgtccttgcgcgacgactggctgtgttgcgt
gggttgcagacagggtcattttccggggtgattgtaacttcggtgaaggcgctgatgcaa
ccaacgttgccaccgtctgatctggcgaacgccacgatccggcttcagcgtgggatgcag
gtgtcgattgaggagaccgttgtaaccctgctggacaacggctatcaacgggtggcgatg
gtcgaagagccaggtgagctgagtcggcgtggcgcgatccttgatgtctggccaccaggt
gatgagctaccgttgcgcattgagtggtttgatgacgagatcgacagtctgcgtcggttt
gatccggcaacccagcgcagcgagcagcgcctggagcgggccgacattggtccaccccac
gaaattccattctggcgccgtgatgaggcactgcgccggattgatgcccttgatatgagt
cagcttcgtcgtgaagttcgcgatgaatgggctgtcgctcgtgaacaactcgccggtggt
cagcgctttgaggggagggccttctatgccccattcttctacgatcagacggcgaccctg
ctggattacctgccaccgcagagcatggtggctttggcggaaggtcatcttcttgcccaa
catgccgatgaaattgatgtgcaggccgccggctatcgggatcaattgctggcgctgggt
gagttgccgcctgactttccacgcccttatctgcgctggagtgagttgcacttgaaggaa
tccgcgaagctcgtcgttgttgatctaagccacaacgaatatcctgacgctttgcccccg
ttgtcgtttggtgttccgccgctatacggtgggcaattacgccgcctgattgatacggtt
gttgagcaggtacggggcggagagctggtggtcgcagttacggcacaggcggcgcgcctg
caagaattggtgggtgagcggttggcacaggaaacagtcagtggccgtttcgtgccgatt
cacggcggactcgaagccggtttcacactcgccgatcttcacctgaccctactcaccgac
agcgagatttttggtgtgcgccagcgccggccactcgccgagcgtcgtcgtaaaaccggt
acgactgatcgtgctgcatttctgcgcacgttaaagccgggcgattacgtagtacatatc
gagcacggtattgccatcttcgacggcatgattcgtcgtaccgtcagcgaagtcgagcgc
gaatatctggtgcttcgttacgctggtgaagacaaaatctacgtgccggttgatcagatc
gaccgggtaacccgctatatcggcgctggtgatggcccaccgacgctgacccgcctcggt
acccaggactgggagcgtaccaagcgcaaagtccgggctgcggtacaggatttggccgaa
gagctgctacgcctctatgctcagcgtcagcttaaatccggctacgccttttcccccgat
aacgaatggcagcgtgaacttgaagccagttttccctatctggaaaccgatgatcagctc
cgggcaattgccgaggtcaaggccgatatggagaagccaacgccgatggatcgcctggtg
tgtggtgatgtaggctttggcaaaacagaagtcgccttgcgtgctgccttcaaagcggtt
caggacggaaagcaagtggctattctggtgccgactactgtactggctcagcaacatttc
gacaccttccgcaagcgcatggcggcctttccggtgacggttgaaatgctctcgcggttt
cgctcgccgaaagaacaagatgcaattatccgcgatctggcgcggggtaagatcgacatc
attatcggcactcatcggctgctctccaacgacgttgtctttcgcaaccttggcctggtg
attattgatgaggaacaacgctttggcgtccgtcacaaagagcgcctcaagttgatgcgc
accgaagtggatgtcttaaccctgaccgccactcccatcccgcgcaccttgcatatggcg
ttggccggtattcgcgatctgagcgtgattgatacgcctcccgaagaccgtatcccgatc
aagacctacgtggtgccgaccgatgatcaccttatccaggaggtgatccggcgtgaactc
gaacgcgaaggacaggtgtacgttgtccacaatcgggtgcagagcatctatcacgtggcc
gaacggttgcgccggctcgtaccggaagcccgcattgcggtcggccatggccagcttgcc
gagcgcgagctggagcaggtaatgatcgacttcttcgagggtcgctatgatgtgttggtc
tgtaccacgattatcgagagtggtctcgatgtgccgaatgccaataccatcatcatcgac
gacgcgaccaattacggcctggcccagctctatcagttacgtggtcgggtcgggcgcggt
gcaacccgagcctatgcctacctgctatacaatgcagcccgcgttatgaccaacgacgca
cgtttgcgcctggaagcgattcaggaagcaactgaactcggcgccggttttcggattgcc
atgcgtgatctggagattcgcggtgccggtaatctccttggtgctgaacagtcgggccac
attgctgccgtcggttttgatctctactcgcggttgttggaacaggctgtgcgaaaactg
aagcaggatgtggatgaactggcagaaacggcgaccgatagctcggttacgccggcggtg
atggccgagagtctgcgtgcgccaaacgtgtcggaacgtgtgctggtagcgccgctggta
acgattgatctgccgcttactgcttacctgccgcccgactacatcagcgatgaaactgtg
cggctggccgtctatcaacgtatggttgatgcaaccacccttgatgaagttcgtgggttg
cgccaggagctgatcgaccgctttggggggccgttacccgaaccggtgttacacctgatc
ctgtggttacagattcgactgctggcgttgcaggccggcgtggcctcgattacgacagaa
ggcgatgtcttcttcatccggctgtcaacaccgctcgctgcgggcgtgcgcgaacgattg
cgccgacggtttccgcgtgatgccgcgattgcctttggtccgcaatcgatccgtcttgac
cgccggctcctcggatcgcaatggcctgagcgactcctggcagtggtagagttactggcc
ggctacagtggcacctga
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