Chlamydia poikilotherma: C834K_0898
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Entry
C834K_0898 CDS
T05716
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor,transcription-repair coupling factor,Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein),transcription-repair coupling factor,TRCF domain
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
chla
Chlamydia poikilotherma
Pathway
chla03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
chla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C834K_0898 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
chla03400
]
C834K_0898 (mfd)
Enzymes [BR:
chla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C834K_0898 (mfd)
DNA repair and recombination proteins [BR:
chla03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
C834K_0898 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
DUF3638
AAA_30
ERCC3_RAD25_C
RecG_dom3_C
ADDB_N
AAA_19
UB2H
Motif
Other DBs
NCBI-ProteinID:
SYX09335
UniProt:
A0A3B0Q1C2
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All DBs
Position
I:988265..991522
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AA seq
1085 aa
AA seq
DB search
MAMDFDPVNLNLPLLSEITNASIPLLIENIRPGARGFLTAKFFREREESVVMITTRSRID
DLFEDLSSFLGFPPVEFPSSEIDLSPKLVNIDAVGKRDKTLYELYEKKAPLFCVTTLKAL
LEKTRSPKDTAHQHLDIQVGDMLDPEMMMDLCKNLGYRHETLASDKGEFAYRGGIIDIFP
LSSQEPFRIEFWGEKIISIRPFNPSDQLSTGKVSKLSISPATKDSGKEVLSHSLLDYFNT
PPRLIFDNLTMLEDDFSEISGTLSSLPNRFLSITDLCERAFQSPTIFFEEKSFPNVHNLK
NNEVNIEVFHRHIKASRLIAPFIYPNETIDEQENPLLGFLKKLQEYIPNKGQPFNAALYN
TKAKSLKEARALVETLAENSIHIYERPGNLSSSFALVQERFAAISLSEFSSTKVLRRQKQ
RNYFSVTTEEVFVPVPGETVVHLHNGIGKFIGMEKKPNHLNIETDYLVLEYADKARLYVP
SDQAYLISRYVGASEKAPDLHNLNGSKWKRSRDLSEKSLVLYAEKLLQLEAQRSTIPSFI
YPPHGEEVIKFAENFPYEETPDQLKAIEQIYSDMMSDKLMDRLICGDAGFGKTEVIMRAA
VKAVCDGHRQVIVMVPTTILANQHYETFSQRMAGLPINIAVLSRFSERKSMKKIFEDAAK
GDIDILIGTHKLINKNLEFKNPGLLIIDEEQRFGVKVKDFLKERYPTVDCLTVSATPIPR
TLYMSLSGARDLSLITMPPLDRLPVSTFILEHNEETLSASLRHELLRGGQAYVIHNRIES
IFRLGNTIRTLVPEACIAVAHGQMSSDELASIFQKFKDQEINILVATALIENGIDIPNAN
TILVDQADKFGMADLYQMKGRVGRWNRKAYCYFLVSHLDRLSGPAAKRLEALNKQEYGGG
MKIALHDLEIRGAGNILGTDQSGHISAIGFNLYCKLLKKTVAALKNNTSPLLFNDDVKIE
FPYKSRIPDTYIDLASMRIEFYQKIGSAEDTEQLELIKEEMRDRFGPIPEEVLWLFALAQ
VRLFALQHNISSIKGTGNALYIQQCHGKTKQIKKTLPYSLSPTPELLISEVLESIEKTFP
LKTPR
NT seq
3258 nt
NT seq
+upstream
nt +downstream
nt
atggcaatggatttcgacccagttaatttaaatctacctctcttatctgaaataactaac
gcctctattccattgctaatagaaaatatccgtcccggagctcgcggattcttaactgcc
aagtttttccgtgagagggaagaatctgtagtaatgatcactacacgttctcgtattgat
gatctttttgaagatctttcctcattcttaggcttccctcctgttgagtttccctcatca
gaaattgatttatctcctaagcttgttaatattgatgccgttggcaaacgcgataagact
ctttatgaattatatgaaaagaaagctcctttattctgcgtaacaaccctaaaagcctta
ttagagaaaacacgctcaccaaaagataccgcgcatcaacatttagatatccaagttgga
gatatgctagatcctgaaatgatgatggatctatgcaaaaacttgggctatcgccatgaa
accctcgctagtgataaaggagagtttgcgtatagaggagggattattgacatcttccct
ctgtcttctcaagaaccttttcggatagaattttggggagaaaagattatctctatacgt
ccttttaatccttctgatcaactttcaacagggaaagtttctaagctatcaatatctcca
gctacaaaagattcagggaaagaagtgttatcacactccctattggattattttaataca
cccccaagacttatctttgataacctaacgatgttagaagatgatttttctgaaatttca
ggaacattatcctcgttacccaaccgctttttatcgattacagatctatgtgaacgcgct
ttccaatctcccacaattttctttgaagagaaaagcttccctaatgtccataatcttaaa
aataatgaagtaaatatcgaagtctttcatcgtcatataaaagcctctcgactcatcgct
ccatttatttatcccaatgaaactatcgacgaacaggaaaatcctcttctaggttttcta
aaaaaacttcaagaatatattcctaataaaggccaaccctttaatgcggccctctacaat
acaaaagcaaaatctttaaaagaagctcgtgctttagtagaaacactagcagaaaattct
atacatatttacgaaagacctgggaatctctcttcaagctttgctcttgttcaagaaaga
tttgcagcgatttccctttcggaattttcatctacaaaagtattgagaagacaaaaacag
agaaattatttttctgtaaccacagaagaagtttttgttcccgttcctggagagactgtt
gtgcatcttcacaatggcatcggtaaatttattgggatggaaaaaaaaccaaatcattta
aacattgaaacagattatctggttcttgaatatgctgataaggctaggctgtatgtacct
tccgatcaagcttacctaatttcacgttacgtaggggcctctgaaaaagctcctgatctt
cacaacctgaatggttctaaatggaaaagatctcgagatctctctgagaaatccctcgtg
ctttatgctgaaaaacttcttcagctcgaagcacaacgttctactataccttcgtttatc
tatcctcctcacggagaggaggtgattaaatttgcagaaaactttccttatgaggaaact
cctgatcaattaaaggctatcgaacaaatttactctgacatgatgtcagataagttgatg
gatcgattaatttgtggtgatgccggatttggaaaaacggaagtcatcatgcgtgctgct
gtgaaagctgtttgtgacggtcatcgacaagttattgttatggtacccacaacgattcta
gcaaaccaacattatgagactttctcacaacgtatggcaggattacctataaacattgct
gttctttcacgattttctgaaaggaaatcaatgaaaaagatatttgaggatgctgctaaa
ggtgatattgacatcctaatcggaacacacaagctaataaacaaaaatctcgaatttaaa
aatcctgggttattaattattgatgaagaacagcgtttcggtgttaaagtcaaagacttc
ctaaaagaacgttatcctactgtagattgcttgacagtatctgcaacaccaatccccagg
acattgtatatgtctttatcgggagctcgtgatctttctttaattaccatgcccccatta
gatagacttcctgtttccacttttattttagaacataatgaagaaacattatcagcatcc
ttacgtcatgaattacttcgtggtggtcaagcttatgtgatccataaccgtattgagagt
atttttagattaggaaatacaatacgaacattggttcctgaagcatgcattgctgttgct
cacggacaaatgtcatcagatgaattagcttctattttccaaaagtttaaagaccaggaa
atcaatattctcgtggcaacagcattgatagaaaacggtattgatattcctaatgccaac
accattttagtagatcaagcagataaatttggtatggctgatctttatcagatgaagggt
agagtaggaagatggaatagaaaagcctattgttatttcctagtttctcatttagatagg
ttgtcaggtcccgctgcaaaacgtttagaagctctgaataaacaagaatatggtgggggt
atgaaaatagcccttcatgatttagaaattcgtggcgcaggaaatatcttaggaacagac
caatcaggtcacataagtgcaatcggattcaatctctactgtaaactattgaaaaagaca
gtcgccgcattaaaaaataacacctctcccctgctatttaacgacgacgtaaagatagag
ttcccttacaaatcacgtattcctgatacctatattgatctggcgtctatgcgtatagaa
ttctatcagaaaataggtagtgctgaagatactgaacagcttgaactaataaaagaagag
atgagggatcgctttggtcctattcctgaagaggttctatggttatttgcccttgctcaa
gtacgcctgtttgctctacaacacaacatctctagcattaaaggtacgggaaatgctttg
tatattcaacaatgtcatggaaaaacaaagcaaataaagaaaacattaccctattcttta
tctccaactccagaattgctaatatctgaagttttagaatctatagaaaaaacttttcct
ctaaaaacccctcgttaa
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