Chloracidobacterium sp. MS 40/45: J8C02_01175
Help
Entry
J8C02_01175 CDS
T07464
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
chlo
Chloracidobacterium sp. MS 40/45
Pathway
chlo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
chlo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
J8C02_01175 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
chlo03021
]
J8C02_01175 (rpoC)
03400 DNA repair and recombination proteins [BR:
chlo03400
]
J8C02_01175 (rpoC)
Enzymes [BR:
chlo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
J8C02_01175 (rpoC)
Transcription machinery [BR:
chlo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
J8C02_01175 (rpoC)
DNA repair and recombination proteins [BR:
chlo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
J8C02_01175 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
QUW00160
LinkDB
All DBs
Position
1:281829..286031
Genome browser
AA seq
1400 aa
AA seq
DB search
MLRHQDKPTVAPDFEAIRISLASPDKIRSWSYGEVTKPETINYRTFKPERDGLFCARIFG
PITDWECLCGKYKRMKYRGVVCDKCGVEVTLSRVRRERLGHIELASPCSHVWFFKGLPSR
IGHLLDIPLRDLEKVLYYESYIVVDAGEMTDIKEKDLLTDEQYRKLFDAYPGQFIARMGA
EAIKTLLERVDCESLSEELRQKMREETSQQKKLKLAKRLKVVDAFRRSGNRPEWMILDVI
PVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLRKLLDLKAPEVIVRNEKRMLQEA
VDALFDNGRRGRVLRGANNRPLKSLSDTLKGKTGRFRQNLLGKRVDYSGRSVIVVGPELR
LHQCGLPKKMALELFKPFIYHQLEKQKYAQTIKQAKEMVDRQAPEVWDILEEVIREHPVL
LNRAPTLHRLGIQAFEPVLVEGKAIKIHPLVCTAFNADFDGDQMAVHIPLSHEAQIEAMI
LMRADNNILSPANGQPIAVPTQDIVLGCYYLTYERADDPKGGRSFATLDDVVIAHDAGIV
NTQSPIKLRYEGLLIDLEQERNQQDLLRATPRHVRQVISTTVGRVIFNQALPEGMPFVNG
VLKKKGLQSLVSYCQLHHGLETTVRMLDSLKAIGFLYAMKAGISIGIDDLVTPPRKAELI
AEADREVARFQREYEEGSITDGERYNKVIATWSQTTEAVAREMNEAMKAAEKNNNELNPI
MVMADSGARGSAQQIRQLAGMRGLMAKPSGAIIEKPIRANFREGLDVLEYFISTHGARKG
LADTALKTADSGYLTRRLVDVAQDVIVSEEDCGTIRGIWVEAISEGGEIIEPLRDRIIGR
VALDDIIDPVTGDILVQANQEITEKLAADIQDAGGIERVKLRSVLTCEARRGVCVKCYGR
NLATGKMVELGEAVGVIAAQSIGEPGTQLTMRTFHLGGAVTGSSEQSSHEARKAGRVKFE
DLRTVTGRDGRLVAMNRNGYVVLIDENRSNREIGRYQIVYGARLTVTDGQLVEEGDTLAT
WDPYTFSILTEVEGTVRYHDLIEGITIQEDIDANTGNRSMIVREATDEKRQPRIEIIGDD
GKTVLKAYQMPVRANLSVRQGDRVLPGDVIAKIPRESTRAKDITGGLPRITELFEARKPR
ETAVMAEIDGIVKFGNVVKGQRKVQIIGDDGETREYSIPKGVNMFIQEGDRVKAGEPLVD
GPLNPHDILAIQGMDALQRYLVNEIQEVYRLQGVNIADKHIEVIVRQMLRWVRVKDVGDT
DFLIDEQVDRFRFEDENNRVIAAGGQPATAEPLLLGITKASLSTESFISAASFQETTRVL
TEAAISGRVDYLRGLKENVIMGRLIPAGTGMEYYRRIRLHEEKTFTVEEDMDVSAYHFDD
ALTQIAETDIQVRKAAKGSE
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
atgctcagacatcaggacaagccaaccgtcgcgcccgactttgaagccattcggatttcg
ctcgcctcaccggacaaaatacgttcgtggtcgtacggtgaagtgaccaagccggaaacc
atcaactaccgaacgttcaaaccggagcgggacggcctgttttgcgcccgcattttcggc
cccatcacggactgggagtgtctgtgcggcaagtacaaacgcatgaaataccggggtgtg
gtctgcgacaagtgcggggtcgaagtcaccctgtcgcgcgtgcgtcgggaacggctcggt
cacatcgagctggcgtcgccctgctcccacgtctggtttttcaaggggctgcccagccgg
attggacacctgctcgatattccactgcgtgatctggaaaaggtgctctactacgagtcc
tacatcgtggtggatgccggcgagatgaccgacatcaaggaaaaagacctgctgaccgac
gagcagtaccgcaagctgtttgacgcctatcccggacagttcatcgcgcgcatgggggcg
gaggccatcaagaccctcctggaacgggtggattgcgagtcgctctccgaagaactgcgc
cagaagatgcgcgaggaaacctcccagcagaagaaactcaagctggccaaacggctcaag
gtcgtggatgccttccggcgttccggcaaccggcccgaatggatgatcctcgatgtcatc
ccggtcattccgccggagttgcgtccgctcgtgccgctcgatggcgggcgcttcgccacg
tctgacctcaatgacctctaccgccgcgtcatcaaccggaacaaccgcctgcgcaagctg
cttgacctcaaagcgccggaagtcatcgtccgcaacgaaaagcggatgctccaggaagcc
gtggacgcgctgtttgacaacggccgccgggggcgggtgctgcgcggggcgaacaaccgt
ccgctcaagtcgctgtcggacacgctcaagggcaagaccggccggttccggcagaacctg
ctgggcaagcgcgtggactactccgggcggtcggtcatcgtcgtcgggcccgaactccgg
ctgcaccagtgcgggctgccgaagaaaatggcgctggagctgttcaagcccttcatttac
caccagcttgaaaaacagaagtacgcccagaccatcaagcaggccaaggaaatggtggac
cggcaggcgccggaggtgtgggacatcctcgaagaggtcattcgggagcatccggtgctg
ctcaaccgggccccaacgctccaccggctggggattcaggcctttgagccggtgctggtg
gaaggcaaggccatcaagattcacccgctcgtgtgcaccgccttcaatgccgacttcgac
ggcgaccagatggccgtgcacattccgctttcccacgaagcgcaaatcgaggcgatgatc
ctgatgcgcgccgacaacaacatcctgtccccggccaacgggcagcccattgccgtgccg
acgcaggatattgttctggggtgctactacctgacctatgagcgcgctgacgacccgaag
gggggacgctccttcgccacgctggatgacgtggtcattgcccatgacgccggcatcgtc
aacacgcaatcacccatcaagctgcgctacgaaggcctgctcattgatctggagcaggaa
cgcaaccagcaggacctgctgcgcgccaccccgcgccacgtccggcaggtcatcagcacg
accgtcgggcgggtcatcttcaaccaggccctgccggagggcatgcctttcgtcaacggg
gttctcaaaaagaaggggttgcagtcgctggtcagctactgccagctccaccacggcctc
gaaacgaccgtcaggatgctcgattcgctcaaggccatcgggtttctctacgccatgaag
gcgggtatctccattggcattgacgatctggtgacgccgccgcgcaaagccgaactcatt
gccgaagccgaccgcgaagtggcgcgtttccagcgcgaatacgaggaaggcagcatcacg
gacggcgagcggtacaacaaggtgatcgccacctggtcgcagacgacggaagccgtggcc
cgggaaatgaacgaggccatgaaagcggccgagaaaaacaacaacgaactcaaccccatc
atggtcatggcggactccggggcgcgtggttcggcgcagcagattcgccagttggccggg
atgcgcgggctgatggccaagccatcgggggccatcatcgaaaagcccattcgcgccaac
ttccgtgaaggtctcgacgtgctggaatacttcatctccacccacggcgcgcgcaagggg
ctggccgatacggcgctcaaaaccgccgactccggctacctcacgcgccgtctggtggat
gtcgcccaggatgtcatcgtgtcggaggaagactgcggcacgattcgcggcatctgggtc
gaagccatcagtgagggcggagaaatcatcgaaccgctgcgcgaccggatcatcgggcgg
gtggccctcgatgacatcattgacccggtgacgggcgacatcctcgtgcaggccaaccag
gaaatcactgaaaaactggcggccgacattcaggatgccggcggcatcgagcgcgtcaaa
ctgcgctcggtgctgacctgtgaagcgcgccggggcgtgtgcgtcaagtgctatggacgc
aacctggcgacgggaaaaatggtcgaactgggcgaggccgtcggggtcattgcggcgcag
tccatcggcgaaccgggaacgcagctcaccatgcgtaccttccacctgggcggcgcggtg
actggctcctccgagcagtcttcgcatgaagcgcgcaaggccggacgggtgaagtttgaa
gacctgcggacggtgacgggacgcgacggccgactcgtcgccatgaaccgcaacggctac
gtcgtcctcattgacgaaaaccgcagcaaccgggaaatcggacgctaccagattgtctat
ggcgcacgtctgactgtcacggatgggcaactcgtggaggaaggcgacacgctggccacc
tgggacccctacaccttctccatcctgaccgaggtcgaaggcacggtgcgttaccacgac
ctcatcgagggcatcaccattcaggaagacattgatgccaataccggcaaccgcagcatg
atcgtccgcgaagccacggatgaaaagcggcagccgcgtatcgaaatcatcggcgatgac
ggcaagacggtgctcaaggcctaccagatgccggtacgcgccaacctgagcgtccgccag
ggcgaccgggtgctgccgggagacgtgattgccaagattccgcgtgaatccacccgcgcc
aaggacatcaccggtggtctgccccggattaccgagctgtttgaagcccggaagccccgc
gaaacggccgtgatggccgaaattgatggcatcgtcaagttcggcaacgtcgtcaagggg
cagcgcaaggtgcagatcattggcgacgacggcgagacccgcgaatactcgattccgaag
ggcgtcaacatgttcatccaggaaggcgaccgggtcaaagccggcgagccgctggtggat
ggcccgctcaatccgcacgacatcctcgccatccagggcatggatgccttgcagcggtat
ctcgtcaatgaaatccaggaagtctatcgcctccagggggtcaacattgccgacaagcac
atcgaagtcatcgtgcgtcagatgctgcggtgggtgcgcgtcaaggatgtgggcgacacc
gacttcctcatcgatgaacaggtggatcgcttccgcttcgaggacgaaaacaaccgcgtg
atcgctgccggcgggcagccggccacggccgagccgctgctgctgggcatcaccaaggct
tcgctttcgaccgaaagcttcatctcggcggcaagtttccaggaaacgacgcgcgttctg
acggaagcggccatttcgggccgcgtggattacctgcgcggcctcaaggaaaacgtcatc
atgggacggctcatcccggccgggaccggtatggaatactaccggcgcatccgtctccac
gaagaaaaaaccttcaccgtggaggaagatatggatgtctcggcctatcacttcgatgac
gccctgacgcagatcgccgaaacggacatccaggttcgcaaggctgccaaggggagcgaa
tag
DBGET
integrated database retrieval system
