Corynebacterium humireducens: B842_01680
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Entry
B842_01680 CDS
T03576
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
chm
Corynebacterium humireducens
Pathway
chm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
chm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
B842_01680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
chm03021
]
B842_01680
03400 DNA repair and recombination proteins [BR:
chm03400
]
B842_01680
Enzymes [BR:
chm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
B842_01680
Transcription machinery [BR:
chm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
B842_01680
DNA repair and recombination proteins [BR:
chm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
B842_01680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AJE32191
UniProt:
A0A0B5D0M4
LinkDB
All DBs
Position
348727..352737
Genome browser
AA seq
1336 aa
AA seq
DB search
MFDVNLFEELRIGLATADDIRRWSKGEVKKPETINYRTLKPEKDGLFCERIFGPTRDWEC
ACGKYKRVRYKGIICERCGVEVTKSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLERIIYFAANIITSVDDEARHNDLSTLEADMLLEKKDVEADAEAEIAERAAKLEED
LAELEAAGAKAEARRKVQTAADKEMQHIRERAEREIDRLEEIWQTFVKLAPKQMIIDETV
YEELLDRYEEYFTGGMGAEAIQTLIRNFDLDAEAEELHTIINEGKGQRKMRALKRLKVVA
AFQRSGNDPAGMVLDCIPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRMIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLKLHECGLPKLMALELFKPFVMKRLVENDYAQNIKSAKRMVERQR
PEVWDVLEEAIAEHPVMLNRAPTLHRLGIQAFEPKLVEGKAIQLHPLACEAFNADFDGDQ
MAVHLPLSAEAQAEARVLMLASNNILSPASGKPLAMPRLDMVTGLYFLTMDKAEGEIGGQ
GAYKPADENGPAQGDYSSFAEAIMARDRGVLGLQAPIRVRISHLRPPAEIEAEFFPEGWE
QGQVWTAHTTLGRVMFNELLPWNYPYLEGVMVRKGGGAGFIMLGDVINDLAAKYPMITVS
QTMDKMKDAGFYWATRSGVTIAMSDVIVLPNKDEILEAYEAEAREIEHKFWVKGALRERD
RYDRLVELWQDATNKVGKAVEELYPDDNPIPMIVKSGAAGNMRQIWTLAGMKGMVVNSKG
DYITRPIKTSFREGLSVLEYFNNSHGSRKGLADTALRTADSGYLTRRLVDVAQDVIVRED
DCGTRQGVRVPVAVEVKDADGNVTGYTEHSLVETSVSGRVFATEVTGESGEVLYEAGSDL
TDEAIDKLVELGITEVKVRSVLTCQTPTGVCAKCYGKSMASGQLVDIGEAVGIVAAQSIG
EPGTQLTMRTFHQGGVGGDITGGLPRVQELFEARVPKNASPIAEFSGTVALEDDGNFYKL
ILTSDDGSEEKVYEKLSKRQGLAQVKVPMDNNPSVLIERTLRDGDHVELGDRLLRGPADP
HDVLRVLRRRGVEKHLIDEVQAVYRTQGVAIHDKHIEIIIRQMLRRGTVIDAGSTEFLPG
TLVDLTEARRINAAVRAEGGQPAELRDQIMGITKASLATESWLSAASFQETTRVLTDAAI
NKRSDQLIGLKENVIIGKLIPAGTGISRYRNIQVKPTEAARNAAYSIPTYGDSIYGDDGY
AEFTGASVPLDEDFQM
NT seq
4011 nt
NT seq
+upstream
nt +downstream
nt
gtgttcgacgtaaacctcttcgaagagctccgcatcggcctggccaccgccgacgacatt
cgccgctggtccaagggcgaggtcaagaagccggagacaatcaactaccgcaccctcaag
ccggagaaggacggtctcttctgcgagcgcattttcggccccacccgggactgggagtgc
gcgtgtggcaagtacaagcgcgtccgctacaagggcatcatctgtgagcgctgtggcgtc
gaggtgaccaagtccaaggtccgtcgtgagcgcatgggccacatcgagctggccgccccg
gtcacgcacatctggtacttcaagggtgtgccgtcccgcctgggctacctgctggacctc
gccccgaaggatctcgagcggatcatctacttcgccgcgaacatcatcacctccgtcgac
gacgaggcacgtcacaacgacctgtccaccctcgaggcggacatgctgctcgagaagaag
gacgtcgaggcggacgccgaggccgagatcgccgagcgcgcagccaagctggaggaggac
ctcgccgagctcgaggccgccggcgccaaggctgaggcccgtcgtaaggtgcagaccgcc
gccgacaaggagatgcagcacatccgcgagcgcgcggagcgtgagatcgaccgtctcgag
gagatctggcagaccttcgtcaagctggctccgaagcagatgatcatcgacgagaccgtc
tacgaggagctcctcgaccgctacgaggagtacttcaccggcggcatgggcgcggaggcc
atccagaccctgatccgcaacttcgacctcgacgccgaggccgaggagctgcacaccatc
atcaacgagggcaagggccagcgtaagatgcgtgcgctcaagcgcctcaaggtcgtcgcc
gcgttccagcgttccggcaacgacccggccggcatggtcctggactgcatcccggtgatc
ccgccggagctgcgtccgatggtccagctcgacggtggccgtttcgccacctcggacctg
aacgacctgtaccgtcgcgtgatcaaccgcaacaaccgcctcaagcgcatgatcgacctc
ggcgcgcccgagatcatcgtgaacaacgagaagcgcatgctgcaggagtccgtcgacgcc
ctgttcgacaacggccgtcgcggccgtccggtcaccggaccgggcaaccgcccgctgaag
tcgctgtccgacctgctcaagggtaagcagggtcgcttccgtcagaacctgctcggtaag
cgagtcgactactccggccgttcggtcatcatcgtcggtccgcagctgaagctccacgag
tgtggtctgccgaagctcatggcgctcgagctgttcaagccgttcgtcatgaagcgtctg
gtggagaacgactacgcgcagaacatcaagtccgcgaagcgcatggtcgagcgtcagcgt
cccgaggtctgggacgtcctggaggaggccatcgccgagcacccggtgatgctcaaccgt
gcgccgacgctgcaccgcctgggtatccaggccttcgagccgaagctcgtcgagggtaag
gccatccagctgcacccgctggcctgtgaggccttcaacgccgacttcgatggtgaccag
atggcggtccacctgccgctgtccgctgaggcgcaggccgaggcccgcgtgctcatgctc
gcctcgaacaacatcctgtccccggcgtccggcaagccgctggcgatgccgcgtctggac
atggtcacgggtctgtacttcctgaccatggacaaggccgagggcgagatcggcggccag
ggcgcctacaagcccgccgacgagaacggtccggcacagggcgactactcgtccttcgcc
gaggccatcatggcccgtgaccgtggtgtcctgggtctgcaggcaccgatccgcgtccgc
atctcgcacctgcgtccgccggccgagatcgaggccgagttcttcccggagggctgggag
cagggtcaggtctggaccgcccacaccaccctgggccgcgtcatgttcaacgagctcctg
ccgtggaactacccgtacctcgagggcgtcatggtccgtaagggcggcggcgcgggcttc
atcatgctcggtgacgtgatcaacgatctcgccgccaagtacccgatgatcaccgtgtcc
cagacgatggataagatgaaggacgccggcttctactgggcgacccgttccggcgtcacc
atcgccatgtccgacgtcatcgtcctgcccaacaaggacgagatcctcgaggcgtacgag
gccgaggcccgcgagatcgagcacaagttctgggtcaagggtgcgctgcgtgagcgtgac
cgctacgaccgtctcgtcgagctgtggcaggacgccacgaacaaggtcggtaaggccgtc
gaggagctgtaccccgacgacaacccgatcccgatgatcgtgaagtccggcgccgccggc
aacatgcgtcagatctggaccctggccggcatgaagggcatggtcgtgaactccaagggt
gactacatcacccgtccgatcaagacctccttccgtgagggcctgtcggtcctggagtac
ttcaacaactcccacggttcccgtaagggcctggccgataccgctctgcgtaccgccgac
tcgggttacctgacccgtcgtctcgtcgacgtcgcgcaggacgtcatcgtccgcgaggac
gactgtggcacccgccagggtgtccgcgtcccggtggccgtcgaggtcaaggacgccgac
ggcaacgtcaccggctacaccgagcactcgctggtcgagacctccgtctccggacgtgtc
ttcgccaccgaggtgaccggcgagtccggcgaggtcctctacgaggcgggttccgacctg
accgacgaggccatcgacaagctcgtcgagctgggcatcaccgaggtcaaggtccgctcc
gtgctgacctgccagaccccgaccggtgtctgcgcgaagtgctacggcaagtccatggcc
tccggccagctggtcgacatcggcgaggccgtcggcatcgtcgccgcccagtcgatcggt
gagcccggtacccagctgaccatgcgtaccttccaccagggtggtgtcggtggtgacatc
accggcggtctgccgcgtgtccaggagctgttcgaggcccgcgtgccgaagaacgcctcc
ccgatcgcggagttctcgggcaccgtcgccctcgaggatgacggcaacttctacaagctg
atcctcacctccgacgatggttccgaggagaaggtctacgagaagctgtccaagcgccag
ggcctcgcccaggtgaaggtcccgatggacaacaacccgtcggtcctcatcgagcgcacc
ctgcgcgacggtgaccacgtcgagctcggtgaccgcctgctccgcggccccgccgacccg
catgacgtcctgcgcgtcctgcgtcgtcgcggcgtcgagaagcacctgatcgacgaggtg
caggccgtgtaccgcacccagggtgtggccatccacgacaagcacatcgagatcatcatc
cgccagatgctgcgccgcggcaccgtcatcgacgccggttccacggagttcctgccgggc
accctggtcgacctcaccgaggcccgccgcatcaacgcggcggtccgcgccgagggcggc
cagccggcggagctgcgcgaccagatcatgggcatcaccaaggcctcgctggccacggag
tcctggctgtccgccgcgtcgttccaggagaccacccgtgtcctgaccgacgccgcgatc
aacaagcgctccgaccagctcatcggcctcaaggagaacgtgatcatcggtaagctgatc
ccggccggtaccggtatctcgcgctaccgcaacatccaggtcaagccgaccgaggcggcc
cgcaacgcggcctactcgatcccgacctacggcgactccatctacggtgacgacggctac
gccgagttcaccggcgcctccgtcccgctggacgaggacttccagatgtag
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