Corynebacterium humireducens: B842_04270
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Entry
B842_04270 CDS
T03576
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
chm
Corynebacterium humireducens
Pathway
chm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
chm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
B842_04270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
chm03400
]
B842_04270
Enzymes [BR:
chm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B842_04270
DNA repair and recombination proteins [BR:
chm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
B842_04270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
AAA_22
DUF3638
Motif
Other DBs
NCBI-ProteinID:
AJE32707
UniProt:
A0A0B5D6B5
LinkDB
All DBs
Position
859025..862672
Genome browser
AA seq
1215 aa
AA seq
DB search
MLAGLLKVAATDPKLKGLVANVGARRLHLTGIDQVRPWAIGTLAHHAPVLVVTATGREAE
DLTAELRAMLGDRVAWFPSWETLPHERLSPGVDTIGQRARVLDLLADDHLSVVVTAARGF
CQPLLAEVEGRAPIRLRVGAEHDFTGLVEELVFRAYSHVDMVARRGEFATRGGILDIFPT
TADQPVRVEFWGDEVTDIRHFAVADQRTIPEVEVTHVEVYPARELPITDAVAARAADLAR
EHPGNATLVELLTKISDRIPADGMEALIPALVDTPMVTLPELMPDNTHVLLVGPEKIRTR
IADLAATDAEFLAAGWEAAAMGASGPVAAAGLDLESSSYRSYESLEAGALQAGQPWWTFA
PPGMFEADDADTLPLDFEAGPTPRGDTTEIAAMMSLLVAHTTAGGRAAFIAPAPGAIRRM
VDRFAEAGVPARVATPGWEPSPGEVTLYQALSHAGLVFDKVRKHRDAAALPLVVITETDL
TGNRVGDIAGAKRRPARRRHRVDPLALKTGDHVVHETHGIGRFLKMAERTIHAGDETSRR
EYIVLEYAASKRGQPADQLWVPMDSLDLLSKYTGGESPTLSKMGGSDWKNTKKKARAAVR
EIAGELVELYAKRQAAPGHQFAPDTPWQKEMEDNFPFVETEDQMLAIDAVKNDMESNVPM
DRVIVGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHLATFEERMAGFPVTIRG
LSRFTTNADAKEITAGLADGTVDIVIGTHRLLATGVHWKNLGLIIVDEEQRFGVEHKEHI
KALRHNVDVLTMSATPIPRTLEMSMAGIREMTTILTPPEDRHPVLTYVGAQEEKQIAAAI
RRELLRDGQVFFIHNKVADIEKKARELRDLVPEARIVVAHGQMSEELLEKTVQGFWDREY
DVLVCTTIVETGLDIANANTLIVENAHHMGLSQLHQLRGRVGRSRERGYAYFLYPKGATL
TETSYDRLATIAQHNDLGAGMAVAMKDLEMRGAGNVLGAQQSGHIAGVGFDLYVRLVGEA
VDAYKALASGQVLDATDQGPKEIRIDLPVDAHIPESYINSERLRLEVYRKLAASATEQDL
RLAVEEMEDRYGPVPEEVSRLLSVARLRHQARRAGISEIIVQGTRIKIGPVELPDSRQVR
LKRLFPGATYRAAAKAIQVSFPKAGRGAGQPNLRDVELIQWVADFLSRMFDIGEVDVTGG
RRQEKKVFTVTEVKR
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
atgctcgccggcctgctcaaggtcgccgccaccgacccgaagctcaagggactggtcgcc
aacgtcggcgcccgccgcctgcacctgaccggcatcgaccaggtccggccgtgggcgatc
ggcacgctcgcgcaccacgcgcccgtgctcgtcgtcaccgccaccggccgcgaggcggag
gacctcaccgccgagctgcgcgccatgctcggcgaccgtgttgcctggttcccgtcctgg
gagacgctgccgcacgaacggctgtccccgggcgtcgacaccatcggccagcgggcccgc
gtcctcgacctgcttgccgacgaccacctgtccgtcgtcgtcaccgccgcccgcggcttc
tgccagccactgctcgccgaggtggagggccgcgccccgatccgcctgcgggtgggcgcg
gagcacgacttcacgggcctcgtggaggagctcgtcttccgcgcctacagccacgtggac
atggtggcgcgccgcggtgagttcgccacccgcggcggcatcctcgacatcttcccgacg
accgccgatcagcccgtccgcgtcgagttctggggcgacgaggtcaccgacatccgccac
ttcgccgtcgccgaccagcgcaccatccccgaggtggaggtcacccacgtcgaggtgtac
ccggcgcgcgaactgcccatcaccgacgccgtcgccgcccgcgccgccgacctggcccgc
gagcaccccggcaacgccaccctcgtggagctgctgacgaagatctccgaccgcatcccg
gccgacgggatggaggcgctgatcccggcgctcgtcgacacgccgatggtcaccctgccg
gaactcatgccggacaacacccacgtcctgctcgtcggcccggagaagatccgcacccgc
atcgccgacctggccgccaccgacgccgagttccttgccgccggctgggaggccgccgcc
atgggagcgtccggccccgtcgccgccgcaggcctggacctggagtcctcctcctaccgc
tcctacgagtcgctggaggccggggccctccaggccggccagccgtggtggaccttcgcc
ccgccgggcatgttcgaggccgacgacgccgacaccctgcccctcgacttcgaggccggc
cccaccccgcgtggtgacaccaccgagatcgccgccatgatgtccctgctcgtcgcccac
accaccgccggcggacgcgccgcgttcatcgcgcccgcccccggcgcgatccggcgcatg
gtcgaccgcttcgcggaggccggggtccccgcccgcgtggccacccccggctgggagccc
tccccgggtgaggtcaccctctaccaggcgctgagtcacgcgggcctggtcttcgacaag
gtgcgcaagcaccgggacgccgccgccctgcccctcgtcgtcatcaccgagaccgacctc
accggcaaccgcgtcggcgacatcgccggcgccaagcgccgccccgcgcggcgtcgccac
cgtgttgaccccctggcgctgaagaccggcgaccacgtcgtccacgagacacacggcatc
ggacggttcctcaagatggcggaacggacgatccacgccggggacgagacgtcgagacgc
gagtacatcgtcctcgagtacgccgcctccaagcgcggccagcccgccgaccagctgtgg
gtccccatggactccctcgacctgctgagcaagtacaccggcggcgagtcacccaccctg
tcgaagatgggcggctccgactggaagaacaccaagaagaaggcccgcgccgccgtccgc
gagatcgccggcgagctcgtcgagctctacgcgaaacgccaggccgcccccggccaccag
ttcgccccggacaccccctggcagaaggagatggaggacaacttccccttcgtcgagacc
gaggaccagatgctcgccatcgacgccgtgaagaacgacatggagtcgaacgtccccatg
gaccgcgtcatcgtcggcgacgtcggctacggcaagaccgaggtcgccgtgcgcgccgcc
ttcaaggccgtgcaggacggcaaacaggtcgccgtcctcgtgccgaccaccctcctcgcc
cagcagcacctggccaccttcgaggaacgcatggccggcttccccgtcaccatccgcggc
ctctcccgcttcaccaccaacgccgacgcgaaggagatcaccgcgggactggcggacggg
accgtcgacatcgtcatcggcacccaccgcctgctggccaccggcgtgcactggaagaac
ctcggcctcatcatcgtggacgaggagcagcgtttcggtgtcgaacacaaggagcacatc
aaggcgctgcgccacaacgtcgacgtgctcaccatgtccgccaccccgatcccgcgcacc
ctggagatgtcgatggccggcatccgcgagatgaccaccatcctcaccccgccggaggac
cgccacccggtgctcacctacgtcggcgcgcaggaggagaagcagatcgccgcggccatc
cgccgggagctgctccgcgacggccaggtgttcttcatccacaacaaggtcgccgacatc
gagaagaaggcccgcgaactgcgcgacctcgtccccgaggcccgcatcgtcgtcgcccac
ggccagatgtccgaggaactgctggagaagaccgtccagggcttctgggaccgcgagtac
gacgtgctcgtctgcaccaccatcgtcgagaccggcctcgacatcgccaacgccaacacc
ctgatcgtcgagaacgcccaccacatgggcctctcccagctccaccagctgcgcgggcgc
gtcggcaggtcgcgggaacgcggctacgcctacttcctctaccccaagggcgccaccctc
accgagacgtcctacgaccgcctcgccaccatcgcccagcacaacgacctcggcgcgggc
atggccgtcgccatgaaggacctcgagatgcgcggcgccggcaacgtcctcggcgcgcag
cagtccggccacatcgccggcgtcggcttcgacctctacgtccggctcgtcggcgaggcc
gtcgacgcctacaaggcactcgcctccggccaggtcctcgacgccaccgaccagggcccc
aaggagatccgcatcgacctgcccgtcgacgcccacatccccgagtcctacatcaactcc
gagcggctgcgcctcgaggtctaccgcaagctcgccgcctccgccacggagcaggacctg
cgcctggccgtcgaggagatggaggaccgctacggccccgtccccgaggaggtctcccga
ctgctgtcggtggcccgcctccgccaccaggcacgccgcgccgggatctccgagatcatc
gtccagggcacccgcatcaagatcggcccggtggaacttcccgactcccgccaggttcgc
ctcaagcgcctgttccccggcgcgacctaccgggcggcggcgaaggccatccaggtgtcc
ttccccaaggccggccgcggcgccgggcagcccaacctccgcgacgtcgagctcatccag
tgggtcgccgacttcctgtcccgcatgttcgacatcggcgaggtggacgtcaccggtggc
cggcggcaggagaagaaggtgttcaccgtgacagaagtcaagcggtag
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