Corynebacterium humireducens: B842_05235
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Entry
B842_05235 CDS
T03576
Name
(GenBank) hypothetical protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
chm
Corynebacterium humireducens
Pathway
chm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B842_05235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chm03019
]
B842_05235
03009 Ribosome biogenesis [BR:
chm03009
]
B842_05235
Enzymes [BR:
chm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
B842_05235
Messenger RNA biogenesis [BR:
chm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
B842_05235
Ribosome biogenesis [BR:
chm03009
]
Prokaryotic type
rRNA helicases
B842_05235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
UvrA_inter
CMS1
Cas3-like_C_2
adh_short
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AJE32898
UniProt:
A0A0B5D9Q5
LinkDB
All DBs
Position
1050639..1052711
Genome browser
AA seq
690 aa
AA seq
DB search
MPAQADLDTRDADTSEAADSENTISDNADNENTAEADETVADADDKNEASEDKCKGNGFD
NLGLPDAVLNAVQKVGYETPSAIQAQTIPVLMQGNDVVGLAQTGTGKTAAFALPILARID
IEDRSPQALVLAPTRELALQVADSFQSFADHLGKISVLPIYGGQAYGIQLSGLRRGAQII
VGTPGRVIDHLEKGSLDISRLRFLVLDEADEMLNMGFQEDVERILEDTPGEKQVALFSAT
MPNGIRRISKQYLNDPHEITVKSETRTNTNITQRFLFTAHRNKLDAITRILEVTEFEAMI
VFVRTRHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAARGL
DVDRISHVLNYDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIERATNAPLE
EMELPTVDEVNESRKEKFADSITASLESKQIDVFRALVKRYSEEKDIPMEDIAAALASQA
QAGEDFLMKEAPPERRRERFDRDDRRGGRFDRDDRRGGRFEDRGERRERGSRFDRDGDFT
TYRLAVGKRQHVRPGAIVGALANEGGLTNKDFGRITIAIDHTLVELPKDMDPGVLDRLSD
TRISGQLINIEKDTGRPPAREGRGGGRGGWRDRDGDDRGGRGGYRGGRDRDDRGGRGGWR
DRDGDDRGGRGGFRGGRDRDDRGGRGGWRD
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
gtgccggcccaggcggatctggacaccagggacgcggatacttctgaggccgccgactcc
gagaacacgatctcggacaacgctgacaacgaaaacactgccgaagcagacgagaccgtc
gctgacgcagacgacaagaacgaagcctcagaggataagtgcaaggggaacgggttcgac
aacctgggcctgcccgacgcagtcctcaatgcggtgcagaaggtgggctacgagaccccc
tccgccatccaggctcagaccatccctgttctcatgcagggcaacgatgtggtcggtctg
gcacagaccggtaccggcaagacggccgcgttcgcgctgccgatcctcgcccgcatcgac
atcgaggaccgctcgccgcaggcgctggtcctcgcaccgacccgtgagctcgcgctccag
gtcgcggactccttccagtccttcgccgaccacctgggcaagatcagcgtcctgccgatc
tacggcggccaggcctacggcatccagctgtccggcctgcgtcgtggcgcgcagatcatc
gtgggcaccccgggtcgtgtcatcgaccacctggagaagggctccctggacatctcccgt
ctgcgtttcctcgtcctcgatgaggccgacgagatgctcaacatgggtttccaggaggat
gtcgagcgcatcctcgaggacaccccgggtgagaagcaggtcgcactgttctccgcgacg
atgcccaacggcatccgccgcatctcgaagcagtacctgaacgacccgcacgagatcacg
gtgaagtccgagacccggaccaacaccaacatcacccagcgcttcctcttcactgcgcac
cgcaacaagctcgacgcgatcacccgcatcctcgaggtcaccgagttcgaggccatgatc
gtcttcgtgcgcacccgccacgagacggaggaggtcgccgagaagctgcgtgcccgcgga
ttctccgccgccgccatcaacggtgacatcgcccaggcgcagcgtgagcgcaccgtcgac
cagctcaaggacggccgtctggacatcctggtggccaccgacgtggcggcccgtggtctg
gacgtcgaccgcatcagccacgtgctgaactacgacatcccgaacgacaccgagtcctac
gtccaccgcatcggccgcaccggtcgtgcaggccgtaccggtgaggcgattctcttcgtc
accccgcgtgagcgccgcatgctccgctccatcgagcgtgccaccaacgcgccgctcgag
gagatggaactgccgaccgtcgacgaggtcaacgagtcccgcaaggagaagttcgccgac
tccatcaccgcctccctcgagtcgaagcagatcgacgtgttccgcgcgctggtcaagcgg
tactccgaggagaaggacatcccgatggaggacatcgccgccgccctggcctcccaggca
caggccggcgaggacttcctcatgaaggaggctccgccggagcgtcgtcgtgagcgtttc
gaccgcgacgaccgccgtggtggacgtttcgaccgtgacgaccgtcggggcggccgcttc
gaggaccgtggcgagcgccgcgagcggggttcccgcttcgaccgtgacggtgacttcacc
acgtaccgtctggccgtcggcaagcgtcagcacgtgcgtccgggcgccatcgtcggtgcc
ctggctaacgagggtggcctgacgaacaaggacttcggtcgcatcaccatcgcaatcgac
cacaccctggtcgagctgccgaaggacatggatccgggcgtcctggaccgtctgtccgac
acccgtatctccggtcagctcatcaacatcgagaaggacaccggtcgtccgccggcccgc
gagggtcggggcggtggccgtggtggctggcgtgaccgtgacggtgacgatcgtggtggc
cgcggtggttaccgcggtggccgtgaccgcgacgatcgtggtggtcgtggtggctggcgt
gaccgtgacggtgacgatcgtggtggccgtggcggcttccgcggtggccgtgaccgcgac
gaccgcggtggtcgtggtggctggcgcgactag
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