Corynebacterium humireducens: B842_09990
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Entry
B842_09990 CDS
T03576
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
chm
Corynebacterium humireducens
Pathway
chm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B842_09990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chm03019
]
B842_09990
03009 Ribosome biogenesis [BR:
chm03009
]
B842_09990
Enzymes [BR:
chm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
B842_09990
Messenger RNA biogenesis [BR:
chm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
B842_09990
Ribosome biogenesis [BR:
chm03009
]
Prokaryotic type
rRNA processing factors
B842_09990
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
AJE33847
UniProt:
A0A0B5DA41
LinkDB
All DBs
Position
complement(2052829..2055768)
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AA seq
979 aa
AA seq
DB search
MADSTEPTHPDAEQNGTDAPKKRRATRRATRKTTAPAAPKVRVHALAKELGKTSKELIEV
LAGMDLKKVAQSTLTVDEVEKVKAALAEPTPEPDEEKIRTRVRKNVANEISQIEEKVEAD
LAELLKEQPDEELLEDITPEITPKPAVEPAVEQFVPLFMAPETETPEPVAEPEEESDDSG
SEEERTASRRRRRGRRGAGRGRGTEEQGEQAVVEKQEPEEEEEDLPEEPVALKGSTRLES
QRRRRAELREEGRRKKHIVSQAEFLARRESVERTMVVRERQRHDHPGMVTQVGVLEDELL
VEHFVTSEAQASMIGNIYLGRVQNVLPSMEAAFIDIGKGRNGVLYAGEVDWKSAGLGGRS
RRIEQALKSGDQVLVQVSKDPVGHKGARLTTQISLAGRFLVYVPGGRSAGISRKLPAPER
KRLKEILGKVVPGQGGAIIRTAAEGVSEEAIAADVDRLHHLWEDIQERADREINSRGSKP
VTMYEEPDMLVKVIRDLFNEDFTSLIVEGERAWNTVHAYVKSVAPDLLDRVQKYQRSSHD
GADSFARHRIDEQLQKALHRKVWLPSGGSLVIDRTEAMTVIDVNTGKFTGSGGNLEETVT
RNNLEAAEEIVRQMRLRDLGGMIVVDFIDMVLPENQELVLRRLKEALGRDRTRHQVSEVT
SLGLVQMTRKRLGTGLLETFSTECEACGGRGLILHDDPVEAPVEIEEKPRRKPAQPHPAA
AAMKRDKPQSDDIEELAAAVVVTDSEEAAEEAEATADTADTASRRRRSRRGRRGTSRGRS
DVADIVDIVDAAVDHADDEDPDEPSGADYVPEKTFQQAVAEFEASPRRRRRTRGNSRSDH
RPRPEDYPGSAASGPVAQAEETMIKVAEAEETTEESGRRRRRRVTRGRAVQPEAPEVKEE
KEEKEPVKQRSNRPSEVSAGAPTRSRGRRRAVRRATRTSQPTQTPVREAEPERRQEPVEG
GVEKRARGRRRVARRMSGR
NT seq
2940 nt
NT seq
+upstream
nt +downstream
nt
gtggctgattccaccgaacccacccacccggacgccgagcagaacgggaccgacgcgccg
aagaagcgccgcgccacccggcgggcgacccgcaagaccaccgcaccggccgccccgaag
gtccgcgtgcacgccctggccaaggagctgggcaagacctcgaaggaactcatcgaggtc
ctcgccggcatggacctgaagaaggtcgcgcagtccaccctcaccgtcgacgaggtggag
aaggtcaaggccgccctcgcggagccgaccccggagccggacgaggagaagatccgcacc
cgggtgcgcaagaacgtcgccaacgagatctctcagatcgaggagaaggtcgaggccgac
ctcgccgagctgctcaaggaacagccggacgaggaactcctggaggacatcaccccggag
atcaccccgaagccggccgtcgaaccggccgtggagcagttcgtgccgctgttcatggcc
ccggagacggagaccccggagccggtggcggagccggaggaggagtccgacgactccggg
tccgaggaggagcgcaccgcttcccgacgccgccgtcgcggccgccgcggcgccggccgc
gggcgtggcactgaggagcagggggagcaggcggtcgtcgagaagcaggagccggaggaa
gaggaggaggacctccccgaggagcccgtcgccctgaagggctcgacccgcctggagtcg
cagcgccgccgccgcgccgagctgcgcgaggaggggcggcgcaagaagcacatcgtctcc
caggcggagttcctggcgcgccgggagtcggtggagcgcacgatggtggtgcgcgagcgt
cagcgccacgaccacccgggcatggtgacccaggtcggcgtgctggaggacgagctgctc
gtcgagcacttcgtcacgtccgaggcgcaggcctcgatgatcggcaacatctacctcggc
cgcgtgcagaacgtgctgcccagcatggaggcggcgttcatcgacatcggcaagggacgc
aacggtgtcctctacgccggtgaggtcgactggaagtccgccggcctcggtgggcgcagc
cgccgcatcgagcaggccctcaagtccggcgaccaggtgctagtccaggtgagcaaggac
ccggtcgggcacaagggtgcccgcctgaccacgcagatctccctggccggacgcttcctc
gtctacgtcccgggtggccgcagcgcgggcatctcccgcaagctgcccgccccggagcgc
aagcgtctcaaggagatcctgggcaaggtcgtccccggccagggtggcgcgatcatccgc
accgccgcggagggcgtgtcggaggaggccatcgccgccgacgtcgaccgtctgcaccac
ctgtgggaggacattcaggagcgcgccgacagggagatcaactcccgcggctccaagccc
gtcaccatgtacgaagagccggacatgctggtcaaggtgatccgtgacctcttcaacgag
gacttcacctccctcatcgtcgagggcgagcgcgcctggaacaccgtccacgcctacgtg
aagtccgtcgccccggacctgctggaccgcgtgcagaagtaccagcgcagctcccacgac
ggcgccgactccttcgcccggcaccgcatcgacgagcagctgcagaaggcgctgcaccgc
aaggtgtggctgccctccggcggttccctcgtcatcgaccgcaccgaggcgatgaccgtc
atcgacgtcaacaccggcaagttcaccggctccggcggcaacctcgaggagaccgtcacc
cgcaacaacctggaggcggccgaggagatcgtccgccagatgcgcctgcgtgacctcggc
ggcatgatcgtcgtcgacttcatcgacatggtgctgcccgagaaccaggagctcgtcctg
cgccgcctcaaggaggcgctcggccgcgaccgcacccgtcaccaggtctcggaggtcacc
tccctgggcctggtccagatgacccgcaagcgcctgggcaccggcctgctggagaccttc
tccaccgagtgcgaggcctgcggtggccgcggactcatcctgcacgacgacccggtggag
gcgcccgtcgagatcgaggagaagccgcgccgcaagccggcccagccgcacccggcggcc
gccgccatgaagcgcgacaagccgcagtccgacgacatcgaggagctcgccgccgccgtg
gtggtcacggacagtgaggaggccgccgaggaggctgaggccaccgcggacaccgcggac
accgcttcccgacgccgccgttcccgccgcggccgccgcggcaccagccgtggtcgcagc
gacgtggctgacatcgtcgacattgtcgacgccgccgtcgaccacgccgacgacgaggac
ccggacgagccttcgggcgccgactacgtgccggagaagaccttccagcaggccgtcgcc
gagttcgaggcctccccgcgccgacgtcgccgcacccgcggcaactcccgctcggaccac
cgtccgcgtccggaggactacccgggttccgcggcctccggtccggtggcgcaggccgag
gagacgatgatcaaggtcgccgaggccgaggagaccaccgaggagtccggtcgtcgtcgc
cgtcgtcgcgtcacccggggccgggccgtgcagccggaggcacccgaggtgaaggaggag
aaggaggagaaggagcctgtgaagcagcgttccaaccgcccctccgaggtgtctgccgga
gcgccgacccgctcccgtggtcgccgtcgtgcggtgcgccgcgcgacccgcacctcccag
cccacccagaccccggtccgggaggcggaaccggagcggaggcaggagccggtggagggc
ggcgtcgagaagcgggcccgtggccgacgtcgtgtggcacggcggatgagtggacggtag
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