Corynebacterium humireducens: B842_12440
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Entry
B842_12440 CDS
T03576
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
chm
Corynebacterium humireducens
Pathway
chm03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
chm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
B842_12440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
chm03400
]
B842_12440
Enzymes [BR:
chm01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
B842_12440
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
B842_12440
DNA repair and recombination proteins [BR:
chm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
B842_12440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
SHOCT
Motif
Other DBs
NCBI-ProteinID:
AJE34333
UniProt:
A0A0B5DDN6
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All DBs
Position
2610793..2611569
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AA seq
258 aa
AA seq
DB search
MNAGFTGDALEVTSPQGRFSAEAALLDGHRIVRAEAVGKHLFIEFDAPHPEHIVYIHLGL
IGQLRFEPAGEQAGQIRLRIRAGDVAAHLRGPQWCRLITEEEYAQIRARSGEDPIRPDAD
PEVLWPRIRRSRRTIGSLLMDQRLFAGVGNIYRAETLFRLGISPFLPGAQLTKAEFDSIW
LDLVGLMAEGVESGRIDTVREIHTPEAMGRAPRKDDHGGEVYVYRRAGLPCYVCGTPVCH
RVLEGRNLFWCPSCQDGD
NT seq
777 nt
NT seq
+upstream
nt +downstream
nt
ttgaacgcggggttcaccggcgacgcactggaggtcacgtccccgcagggtcgtttctcc
gccgaggcggcgcttctcgacggccaccggatcgtccgggccgaggccgtcggcaagcat
ctgttcatcgagttcgacgcaccccacccggagcacatcgtctacatccacctggggctc
atcgggcagctgcggttcgagccggccggggagcaggcggggcagatccggctgcggatc
cgcgccggggacgtggcggcgcatctgcgggggccgcagtggtgccggctcatcacggag
gaggagtacgcgcagatccgggcacggtcgggtgaggacccgatccgtcccgacgccgac
ccggaggtcctgtggccgcggatccggcggtcgcggcgcacgatcggctcgctgctgatg
gaccagaggctcttcgccggggtgggcaacatctaccgcgcggagacgctgtttcgcctg
gggatctccccgttcctgccgggtgcgcagctgacgaaggccgagttcgacagcatctgg
ctcgacctggtggggctcatggcggagggggtggagtcggggcgcatcgacacggtgcgg
gagatccacaccccggaggccatggggcgggcgccccggaaggacgaccacggcggcgag
gtgtacgtctaccgccgcgccgggctgccctgctacgtgtgcggcacgccggtgtgccac
cgggtgctggagggccgcaatctcttctggtgcccctcgtgtcaggacggtgactag
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