Corynebacterium halotolerans: A605_04810
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Entry
A605_04810 CDS
T02472
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
chn
Corynebacterium halotolerans
Pathway
chn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
chn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A605_04810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
chn03400
]
A605_04810
Enzymes [BR:
chn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A605_04810
DNA repair and recombination proteins [BR:
chn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
A605_04810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_22
RecG_dom3_C
DUF7270
Motif
Other DBs
NCBI-ProteinID:
AGF71970
UniProt:
M1NWX1
LinkDB
All DBs
Position
1026908..1030600
Genome browser
AA seq
1230 aa
AA seq
DB search
MATAQKNRNAPKKEPAMLAGLLKVAATDPKIKGLISHVGERNLHLTGIDQARPWAVGALA
HHAPVLVVTATGREAEDLTAELRAMMGDRVALFPSWETLPHERLSPGVDIIGHRARVLDH
LADLRVVVTAARGFCQPLLETVEGREPIRLAEETEHDFSALTEQLVFRAYNHVDMVAKRG
EFATRGGILDVFPTTLDYPVRIEFWGDEISEIRQFSVADQRTIPEIEVGEVEIYPARELP
VTDAIAQRASELAVRHPGNPTLVELLSKLSDRIPADGMEALIPALVDTPMVTLPEFMPDG
THVVLMAPEKIRTRINDLETTDAEFLAAGWEAAAMGADGPLAAEGLDLTASSYRSYDSLE
VTVRNTGLPWWTFAPPGMYLADEADTLPLELEPGPRPRGDLEAINEMMAQLLAHTMAGGR
AAFIAPAEGAIKRMVDRFKEKGIPARVATPGWEPSPGEVTLYRALSHAGLVFPKVRKPRD
ADALPLVVVTETDLTGNRVGDIAGAKRRPAKRRNRVDPLALKTGDFVVHETHGIGRFLKM
AERTINSGDETSRREYIVLEYAPSKRGQPADQLWVPMESLDLLSKYSGGEQPSLSKMGGS
DWKNTKKKARAAVREIAGELVQLYAKRQSAPGHAFAPDSPWQTEMEDNFPFVETEDQMMA
IDAVKEDMEKDIPMDRVIVGDVGYGKTEVAVRAAFKAVQDGRQVAVLVPTTLLAQQHQNT
FEERMAGFPVTIRGLSRFTSAKESKEILKGLADGDIDVVIGTHRLLQTGVHWKNLGLIIV
DEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEDRHPVLT
YVGAQEDKQVAAAIRRELLRDGQVFYIHNKVSDIEKKARELRELVPEARIVIAHGQMSEE
LLEQTVQGFWDREYDVLVCTTIVETGLDIANANTLIVENAHHMGLSQLHQLRGRVGRSRE
RGYAYFLYPKGATLTETSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNVLGAEQSGHIA
GVGFDLYVRLVGEAVETFRALAQGKPIDATEDTGPKEIRIDLPVDAHIPESYINSERLRL
EVYRKLAASADNRDLQLVIEEMEDRYGPVPEEVSRLLAVARLRHQARRAGVSDIIVQGTR
IKVHPVDLSDSRQVRLKRLFPGSNYRAAAKAIQLSFPKAGRNVTDPKLRDVELLQWMADF
LSKMFDLDEIDVTGGRKPVEKKRKVFSVSE
NT seq
3693 nt
NT seq
+upstream
nt +downstream
nt
atggccaccgcacagaagaaccggaacgccccgaagaaggagccggcgatgctcgcgggc
ctgctcaaggtcgccgcgacggacccgaagatcaagggactcatctcccacgtcggggag
cggaacctgcacctgaccggcatcgaccaggcgcgtccctgggcggtcggcgcgctcgcg
caccacgccccggtgctggtggtcaccgccaccgggcgcgaggccgaggatctgaccgcc
gagctcagggcgatgatgggggacagggtcgccctcttcccgtcctgggagaccctcccg
cacgagcgtctgtccccgggcgtggacatcatcggccaccgggcgcgggtcctcgaccac
ctggctgacctgcgcgtcgtggtcaccgccgcccgcggattctgtcagccgctgctcgag
accgtggagggccgcgagccgatcaggttggccgaggagaccgaacacgacttctcggcg
ctgaccgaacagctggtcttccgcgcctacaaccacgtggacatggtggccaagcgcggc
gagttcgctacccgcggcggtatcctggacgtcttcccgacgaccctggactaccccgtg
cgcatcgagttctggggcgacgagatctccgagatccgccagttctccgtcgccgaccag
cgcaccatccccgagatcgaggtcggcgaggtggagatctacccggcccgcgaactgccg
gtcaccgacgccatcgcccagcgcgcctccgagctggcggtccggcacccgggcaacccg
accctggtggagctgctgagcaagctcagcgaccgcatccccgccgacggcatggaggcg
ctgatccccgcgctcgtcgacacgcccatggtcaccctgcccgagttcatgcccgatggc
acgcacgtggtgctcatggcaccggagaagatccgcacccgcatcaacgatctggagacc
accgacgccgaattcctcgccgccggctgggaggccgccgcgatgggcgccgacggcccc
ctggccgccgaggggctggatctcaccgcgtcgtcctaccgctcctacgattccctcgag
gtcaccgtccgcaacacaggtctgccctggtggaccttcgccccgccgggcatgtacctc
gccgacgaggccgacaccctgccgctggagctcgagcccggcccccgcccgcgcggcgac
ctcgaggccatcaacgagatgatggcgcagctgctggcccacaccatggccggcggacgc
gccgcgttcatcgccccggccgagggcgcgatcaagcgcatggtcgaccgcttcaaggag
aagggcatccccgcgcgcgtggcgacgcccggttgggaaccgagccccggcgaggtcacc
ctctaccgggcgctcagccacgccggcctggtgttcccgaaggtacgcaagccccgcgac
gcggatgcactgccgctggtcgtggtcaccgagacggatctgaccggcaaccgggtcggt
gacatcgccggcgccaagcgccgccccgccaagcgccgcaaccgcgtcgacccgctggcg
ctgaagaccggcgacttcgtcgtccacgagacccacggcatcggccgcttcctcaagatg
gccgagcgcaccatcaactccggcgacgagacctcgcgccgcgagtacatcgtcctcgag
tacgcgccgtccaagcgcgggcagcccgccgaccagctgtgggtgcccatggagtcgctc
gacctgctgagcaagtactccggtggcgagcagccgagcctgtccaagatgggcggttcc
gactggaagaacacgaagaagaaggcccgggccgcggtccgggagatcgccggcgagctg
gtccagctctacgccaagcgtcagtccgcgccggggcacgccttcgcccccgattcgccc
tggcagacggagatggaggacaacttccccttcgtcgagaccgaggaccagatgatggcc
atcgacgcggtcaaggaggacatggagaaggacatccccatggaccgcgtcatcgtcggc
gacgtcggctacggcaagaccgaggtggcggtgcgcgccgccttcaaggccgtgcaggac
ggccgccaggtcgcggtgctcgtgcccaccacgctgctggcccagcagcaccaaaacacc
ttcgaggagcgcatggccggtttcccggtgaccatccgcgggctgtcgcgcttcacctcc
gcgaaggagtccaaggagatcctcaagggcctggccgacggcgacatcgacgtcgtcatc
ggcacccaccgcctgctgcagaccggtgtgcactggaagaacctcggcctgatcatcgtg
gacgaggagcagcgcttcggtgtggaacacaaggagcacatcaaggccctgcgcacccac
gtcgacgtgctgacgatgtccgccacgccgatcccgcgcaccctcgagatgtccatggcc
ggcatccgcgagatgtcgacgatcctcaccccgcctgaggaccgtcacccggtcctgacc
tacgtcggcgcacaggaggacaagcaggtcgccgcggcgatccgccgcgagctgctgcgc
gacggccaggtcttctacatccacaacaaggtctccgacatcgagaagaaggcccgcgaa
ctgcgggagctggtgccggaggcacgcatcgtcatcgcccacgggcagatgagcgaggag
ctgctggaacagaccgtccagggcttctgggaccgggagtacgacgtactggtgtgcacg
acgatcgtcgagacgggcctggacatcgccaacgccaacaccctgatcgtggagaacgcc
caccacatgggtctgtcccagctgcaccagctgcgcgggcgcgtggggcgctcccgcgag
cgcggctacgcgtacttcctctacccgaagggcgcgaccctgacggagacctcctacgac
cgcctggcgacgatcgcgcagaacaacgacctgggcgccggcatggccgtggcgatgaag
gatctggagatgcgcggcgccggcaacgtcctcggcgccgagcagtccggccacatcgcg
ggcgtcggcttcgacctctacgtccgcctggtcggagaggccgtggagaccttccgggcg
ctggcccagggcaagccgatcgacgccacggaggacaccggcccgaaggagatccgcatc
gacctgcccgtcgacgcgcacatccccgagtcctacatcaactccgagcgcctgcgcctg
gaggtctaccgcaagctggcggccagtgcggacaaccgggacctgcagctggtcatcgag
gagatggaggaccgctacggccccgtgccggaggaggtctcccggctgctggccgtggcc
cgcctgcgacaccaggcccgtcgcgccggggtctccgacatcatcgtccagggcacccgc
atcaaggtccaccccgtcgacctgtcggattcgaggcaggtgcggctcaagcggctgttc
ccgggctcgaactaccgcgcggcggccaaggcgatccagctgtccttcccgaaggcgggg
cgcaacgtcaccgacccgaagctgcgcgacgtcgagctgctgcagtggatggccgatttc
ctgtcgaagatgttcgacctggacgagatcgacgtcaccggcggcaggaagccggtggag
aagaaaaggaaggtcttctcggtcagcgagtag
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integrated database retrieval system
