Cryptosporidium hominis: Chro.20350
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Entry
Chro.20350 CDS
T00210
Name
(RefSeq) PABP1-dependent poly A-specific ribonuclease subunit PAN3; PABP-dependent poly(A) nuclease 3
KO
K12572
PAB-dependent poly(A)-specific ribonuclease subunit 3
Organism
cho
Cryptosporidium hominis
Pathway
cho03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cho00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Chro.20350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cho03019
]
Chro.20350
Messenger RNA biogenesis [BR:
cho03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
Chro.20350
mRNA degradation factors
3'-5' decay
Pan complex
Chro.20350
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pan3_PK
Pkinase
Motif
Other DBs
NCBI-GeneID:
3412458
NCBI-ProteinID:
XP_667881
LinkDB
All DBs
Position
2
AA seq
763 aa
AA seq
DB search
MKEKTPGEAKRGDIETKSHSGLVSSFHADAPTFQPRSGFVVGMGSGAGTGTGTGTGASGA
SGSGGEMGSGLTASAQPFIPSAIRHNTSNTIDHEHGGFQISSASYSNSQLGAQPASGSKQ
NLVFNGSGSILGGANQDSGGFGGMDLLGNTSVSDGAIGVISGLPGSEYEGLLLGGTTSGQ
KSSSSLQEESQTSLGGGGIHGIQYGSGASSGPGNSGVSSFQSHGMNGIDSSNYYGDSGSH
TVGQNQSVAAGSGPGAVSGGIGLGLGVGVGGSGPSAGITQHHHPHPNVLDLSEYCRRVRG
WNLPFLRTIPQMNAITQIRHELQLQNISLLLTQNDIISANQGHGNNSGEGSGNGAGGAGN
GSGGIGQHYVPPIVQRIFYGLCLLDDSNVASTTRFCGYQTYAYKAINVEDYSAYCLRRID
GFPLSEFEAVRPLLERWQKLAQHPCIVSYRQSFASLDFSQGSLIAVYDYIPNASTMESVH
FKEPIGEPLLWNYIIQIVLALVHIHSSQLAARVIDPTKLLISYRGRLRLNCVGILDLTRV
DESKTILDYQKQDLVALGYIILALCCGSLTIINDLNHAVEQIFLKSSLYSNDLKKLVLIL
LSKPALNKNNLDVFILANMLAARMIPQIEHSLKLTDALENEFRKEIDNGRLFRLLTKINT
IADRTQLNAIHKWNETGDRYICKLFREYLFQQTDSQGRPVVDMGHILDSLAKVDVGTSET
ITLMSSDGSSILLVSFADIKHSIEKSFCEIIAATTTSSNFHDL
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaaaagacaccaggagaagcaaagcgaggtgatattgaaaccaaatcacactcg
ggattggtttcctcgttccatgcagatgctcctactttccagccacgaagtggcttcgtg
gtagggatgggatctggagcaggaacaggaacaggaacaggaacaggagcaagtggagct
tcaggctctggaggggagatgggatctggattaacagcttcagcacaaccttttatccca
tcagcaattagacacaatacaagcaatacaattgatcatgagcatggaggtttccagatc
tcctctgctagctattctaactctcagcttggagctcaaccagctagtgggtcaaagcag
aacctagtttttaatggttcgggaagtattctaggaggtgctaatcaggattcaggaggg
tttggagggatggatcttcttggtaatacttccgtctctgacggagctataggtgtcatt
agtggtctccccggatcagagtatgagggattattgcttggaggaactacgtctggacaa
aagtccagctcaagcttgcaagaggaatcacaaacctctttagggggaggaggtattcat
ggtattcaatacggctctggagcaagttctggcccggggaactcaggagttagtagtttc
cagagccatggtatgaatggaatcgattcctcgaattactatggtgactcaggtagccac
acagtgggacagaatcaatccgtagcagccggatcggggccaggagcggtatctggagga
ataggattgggtctgggagtaggggttggtggctcaggcccctctgcagggattacccag
caccaccatccacaccctaatgtattggatctttcggaatattgtagaagggttagaggt
tggaatctgccattcttgagaacaatcccacagatgaatgctatcactcaaataagacat
gagctgcagcttcagaacatttcccttttattaacacaaaacgatattatctcggccaat
caaggtcatggcaacaactctggagaaggaagtggaaatggagctggaggagctgggaat
ggttctggaggaattggacagcattatgtacctcctattgtacaaaggatcttctatggt
ctttgtttactcgatgattcaaatgtggcttcgacaactagattttgtggttatcagacc
tacgcctacaaggcaattaatgttgaagactactctgcttactgtttgagaagaatagac
ggttttcctctctcagagtttgaagctgtaagacctcttttagagagatggcagaagctt
gcacagcatccatgcattgtatcatacagacagagctttgcatctttggatttttcacag
ggttcgttaatagcagtatatgattatatcccaaatgctagtacaatggaatcagttcat
ttcaaagaaccaatcggagagcctttattgtggaattacattattcagattgttcttgct
ttggttcatatccatagttctcagctcgcagcaagagtgatagatccaacaaaactgtta
atttcatatagaggcaggttacgtttgaattgcgtaggaattttggacctaacaagggta
gatgaatctaaaacgatcttggactaccagaaacaagatctggttgctcttgggtatata
atccttgctttatgttgtggatcgctgacaattattaatgatttaaatcatgcagttgaa
caaattttcctgaaatcatccttatactcgaacgatctaaaaaagttagtacttattctt
ctttcaaagcctgctttgaacaagaataacttggatgttttcatcctcgccaatatgcta
gcagcaagaatgatccctcaaattgagcacagtctgaaacttactgatgctctggagaac
gaatttaggaaagaaattgacaatggaagactctttagacttctaaccaaaattaacaca
attgcggacagaacacaacttaatgctattcacaagtggaacgagactggggacagatat
atttgcaaactttttagagagtacttattccagcaaacagatagccaaggaagacccgta
gttgatatggggcatattcttgactctcttgccaaagttgacgtcggtactagtgaaacc
atcactctcatgtctagcgatggctcctccatcctgcttgtctcctttgctgacataaag
cattcaattgaaaagtccttctgcgaaatcatcgcagctaccaccacaagttctaacttc
cacgacttataa
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