Chondrocystis sp. NIES-4102: NIES4102_01820
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Entry
NIES4102_01820 CDS
T05085
Name
(GenBank) DNA-directed RNA polymerase subunit beta''
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
chon
Chondrocystis sp. NIES-4102
Pathway
chon03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
chon00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NIES4102_01820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
chon03021
]
NIES4102_01820
03400 DNA repair and recombination proteins [BR:
chon03400
]
NIES4102_01820
Enzymes [BR:
chon01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NIES4102_01820
Transcription machinery [BR:
chon03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NIES4102_01820
DNA repair and recombination proteins [BR:
chon03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NIES4102_01820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RNA_pol_Rpb1_3
Apocytochr_F_C
RPOC_hybrid
Biotin_lipoyl
RPN1_C
Motif
Other DBs
NCBI-ProteinID:
BAZ43183
UniProt:
A0A1Z4RL37
LinkDB
All DBs
Position
198724..202671
Genome browser
AA seq
1315 aa
AA seq
DB search
MKFYNHIVDKGRLKKLMTLAYTEYGSAHSATMADSLKELGFRYATVAGVSISVDDLKVPP
IKAEMLEAAEAEIRETEQRYARGEITEVERFQKVIDTWNSTSENLKDEVVTNFRATDPLN
SVYMMAFSGARGNLSQVRQLVGMRGLMADPQGEIIDLPIKTNFREGLTVTEYIISSYGAR
KGLVDTALRTADSGYLTRRLVDVSQDVIVREVDCGTQRGIHLQAMKDGDRTLIQLSDRLL
GRVLAEDVKDPKTGEVIAKRNQDMDRELAKELGDRVEDVLVRSPLTCEAARSVCQKCYGW
SLAHGHMVDMGEAVGIIAAQSIGEPGTQLTMRTFHTGGVFTGEVARQIRAKVDGKVKFGP
GLTTRPIRTRHGDERNQVETVGDIQLIPNKGKTINNALTAGSLIYVQDGQEVKKDQLLVE
VAKVKVQKSTEKAAKDVASDLAGEVVFADLVPEDKKDRQGNTTRIAQKPGLLWILSGEVY
NLLPGAEALVKNGDKIKPGDVLAQTRLTAANGGVVRMIPNSREIEIVTASVSLDQAKVKI
ESDGGREQYIIYTADERKFLLRATPGTKVQNNQIVAELIDDRYKTETGGIIKYGGIAIGK
GNRKQGYEVEKGGTLLWIPEESHEVNKDISLLIVEDGEYVEAGTEVVKDVFCQSSGIVEV
VQKNDILREIIIKPGEIHQLDDTKSEWHEQIIQPGTEVFPGVIVEELRYGEVVETTEGPA
LILRPVKEFEVADEPSIPSQASINQDDGRQIELRSVQRIFYRDGERVKSVNSLSLLSTQL
VLEIATTEENDVIANLSADIELQPEEDDPTTQRLQMVILESLVLRRDTDVDPHSGEIQTR
VLVEDGQEIAKGATIARTEIQCKSTGEVQGIREGSEAIRRILVVRDSDLITHKLDIPKAK
CIYKPGDLLVSGTELAKGVHLEQSGQVVKVTEDGDKTTVVFRHTRPYRVSQGAILHIDHG
DLVQRGDNLVLLVFERSKTGDIIQGLPRIEELLEARKPKESSVLSRSSGVCQVVYEENET
VDIKIIEQDGVISDYPIKPGQNAIVSDGQVVEAGEPLTDGPANPHEILETYFNYHLPEKG
CYQASLIGLQQAQLFLVRQVQSVYQSQGIDISDKHIEVIVRQMTNKVRIDDGGDTIILPG
ELLELRQIEQVNEAMSITGGAPAQYTPVLLGITKASLNTDSFISAASFQETTRVLTEAAI
EGKSDWLRGLKENVIIGRLIPAGTGFNAHDEPASSRNDLDSSYRSNGLYGYGDDFDSYRL
DEELTAGIETMPLRSYKNLSDDENVILDDHTARAYTGLDDSEFDMDMDMDYGEEE
NT seq
3948 nt
NT seq
+upstream
nt +downstream
nt
atgaaattttataaccacattgtcgataaaggtcgtctaaaaaaattaatgactttggct
tataccgaatatggatcggctcatagtgccactatggcagattcactgaaggaattaggc
tttcgttatgccacagtagcaggggtttcgattagtgtcgatgacctcaaagtgccacca
attaaagccgaaatgctagaagcagcagaagcggagattagagaaacagagcaacgctat
gctagaggcgaaatcaccgaggtagaacgtttccagaaggtaattgatacttggaatagc
acttcagaaaatcttaaagatgaggtggtaactaatttccgtgcaactgatccgctaaat
tccgtatatatgatggcctttagtggagctagggggaatttatcgcaggtacgtcaatta
gtgggaatgagggggttgatggcagatcctcaaggagaaattattgacttaccgattaaa
actaacttccgtgaaggattaactgttacagaatatattatttcttcttatggagcgcgt
aaaggtttagtagatactgctttaaggacggcggactctggttatttgacccgtcgttta
gtggatgtttcccaagatgtaattgtcagagaagtagactgtggaactcaacggggtatt
catctacaagcaatgaaagatggcgatcgcactttgattcagttgtcggatcgtctctta
ggtagggtattagctgaagatgttaaagatccaaaaacaggcgaggtaattgctaaacgt
aatcaagatatggatcgcgaattagctaaagaattaggcgatcgcgtggaagatgtttta
gtacgctctcctcttacctgtgaagctgctcgctccgtttgccaaaaatgctacggttgg
agtttagcccacggacacatggtagacatgggtgaagctgtgggaatcatcgctgctcaa
tctattggtgaacctggtacacagttaaccatgcgtacattccatactggtggtgtattc
actggggaagttgctcgtcaaatacgtgcaaaagtagatggtaaagttaaatttgggcca
ggcttaaccactcgtccaattcgtactcgtcacggggatgaaagaaatcaggtagagact
gttggtgatattcagctaattcccaacaaaggtaaaaccatcaataatgctttaactgct
ggttctttaatttatgtccaagatgggcaagaagttaaaaaagatcagttattagtggaa
gttgccaaagttaaggtacaaaaatcaactgaaaaagcagctaaagacgttgcttctgat
ttagcaggagaagtagtttttgccgatttagtaccagaggacaaaaaagatcgtcaaggt
aacactactcgtattgctcaaaaaccaggactactgtggattttatcgggagaagtatat
aatttacttccaggagccgaagcgttagttaaaaatggcgataagatcaaaccaggagac
gttttagctcaaaccagactcactgctgctaatggtggggtagttaggatgattcctaat
agtcgggaaattgagatcgtcaccgcttctgtctcgttagatcaagcgaaggtcaaaatt
gaaagtgatggtggtcgtgaacaatacattatttacacggctgatgagcgtaaattctta
ctaagagccaccccaggtactaaagtacaaaacaatcaaattgtcgctgaattaattgac
gatcgctataaaactgaaacaggtgggattatcaaatatggtggaattgccattggtaaa
ggtaatcgcaaacaaggttatgaagtagaaaaaggtggtactcttctgtggatacctgaa
gaaagccatgaagtcaataaagacatttctcttctaattgttgaagatggcgaatatgtc
gaagctggtacagaagttgtcaaagatgtattctgtcaatcatcaggtatagtcgaagtc
gtccagaaaaatgatattctacgcgaaattattatcaaaccaggagaaatacatcagtta
gatgataccaagagtgaatggcacgaacagataattcaacctggcacagaggtatttcct
ggagttatcgtagaagagcttagatatggagaagtagtagaaacaactgaaggccctgcg
ctcattttacgacctgttaaggaatttgaagtagcagatgaaccttctattccttcccaa
gcatcaattaatcaagatgatggtcgtcaaattgaactacgttctgtacaaagaatcttt
tatcgcgatggtgaaagggtaaaatctgttaacagcttatctctacttagtactcagttg
gtactagagattgctactacagaagaaaacgatgttattgctaatttaagtgcagatatc
gaattacaaccagaggaggatgatcctactactcaaagactacagatggttattttagaa
tctttagttttaagaagagatactgatgtagatcctcatagtggagaaattcaaactcgg
gttttagttgaagatggtcaagaaattgccaaaggtgctacgatcgcccgtactgaaatt
cagtgtaagtcaacaggagaagttcagggtattcgagagggttcagaagctattcgtcgg
attcttgtggtgcgagatagtgatttgatcacccataagctagatatccccaaggctaaa
tgtatctataagccaggtgatttattagtctctgggactgaacttgccaaaggagttcat
ttagaacaatcaggacaggttgttaaagtaactgaggatggagacaaaactaccgtagtg
ttccgtcatactcgtccttatcgtgtatctcaaggggcgatattacatattgatcatggt
gatttggttcagcgtggtgataatttggtgctattggtctttgaacgttctaaaactggt
gacattattcaaggtctacctcgaattgaggaattattagaagctcgcaaacctaaagaa
tcatctgtcctcagtcgtagttcaggtgtgtgtcaggtggtttatgaggaaaacgaaacc
gtagatatcaaaatcattgaacaggatggagtcattagtgattatccaattaagcctgga
caaaatgctattgtcagtgatggacaggttgtagaggctggagaacccttaactgatggc
cctgctaatccccatgagattttagagacatactttaattaccatttacctgaaaaaggt
tgttatcaagcctctctaattggtctacaacaagcacaactatttttagtgcgtcaggta
cagtctgtgtatcagagtcaaggaattgatatctcggataaacatatcgaggtaattgtt
agacagatgaccaataaggttaggatagatgacggtggcgatacaattattcttcctggg
gaattgcttgagttacgtcaaattgagcaagtaaacgaagcgatgtctattactggtggc
gcacctgctcagtatacaccagtgttattaggtattactaaagcatcccttaatactgat
agctttatatcagcagcttcattccaagaaaccactagagttttaaccgaagcagcaatt
gaaggtaaatcagattggttaagaggcttgaaagaaaacgtcattattggtcgtctcatt
cctgcgggaactggctttaatgcccatgatgaacctgcatcatctcgcaatgatcttgat
tcttcctatcgcagtaatgggttgtatggatatggggatgattttgactcttaccgtttg
gacgaggaattaacagcaggaatagaaaccatgccccttcgttcctataaaaacctaagt
gatgatgaaaatgtcattctcgatgatcatacagctagagcctatactggtttagatgat
tccgagtttgatatggatatggatatggattacggggaggaagagtag
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