Chondrocystis sp. NIES-4102: NIES4102_14480
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Entry
NIES4102_14480 CDS
T05085
Symbol
truB
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
chon
Chondrocystis sp. NIES-4102
Brite
KEGG Orthology (KO) [BR:
chon00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
chon03016
]
NIES4102_14480 (truB)
Enzymes [BR:
chon01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
NIES4102_14480 (truB)
Transfer RNA biogenesis [BR:
chon03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
NIES4102_14480 (truB)
Prokaryotic type
NIES4102_14480 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB-C_2
Motif
Other DBs
NCBI-ProteinID:
BAZ44439
LinkDB
All DBs
Position
1666206..1667114
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AA seq
302 aa
AA seq
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MFGFINLHKPVGFTSHDCVAKLRRLLNTKKIGHGGTLDPLATGVLPIAVGKATRLLPFLP
TQKAYRALIRLGVSTTTDDLEGDIVSSTNDLDLSTTEITNGLNNFLGTITQIPPMYSAIK
KDGKKLYQLARKGETIELEPRIVTIDKIELINISKKEFLDLEVEIDCSPGTYIRAIARDL
GKQLGVGGTLGGLVRTNSCGMQLQNSLTFDEIENQLQQATFSLIEPSLILKHLNFVTLAN
EDAKRWCQGQLVDLTQAKINYPVLTAQEDIYLATYNATGIFLGISLLIERDNILKIKPKI
VC
NT seq
909 nt
NT seq
+upstream
nt +downstream
nt
atgtttggttttatcaatttacataagcctgtcggatttacttctcatgattgcgttgct
aaactcagacgtttattaaataccaagaaaattggtcacggtggaacactagaccctcta
gcaactggagtattacctatagcggtgggtaaggctactagattattaccatttctacct
acgcaaaaagcctatcgagccttgattcgtttaggagttagtacaacaaccgatgatttg
gaaggagatatagtttcctcaactaatgacctcgatctttctacaactgaaattactaat
ggtttaaataattttttaggtacaattactcaaattccgcctatgtatagtgctatcaaa
aaagatggcaaaaaactttatcaattagctagaaaaggggaaactattgaattagaacct
agaatagtaactattgataagattgaactaattaatatatccaaaaaagaatttttagat
ttagaagtagaaatagattgtagccctgggacatatattagagcgatcgcccgtgatttg
ggtaaacaattgggagttggtggaactttagggggtttagttcgcacaaatagttgtgga
atgcagctacaaaatagtcttacttttgatgagatagaaaaccaattacaacaagcaact
ttttctttaattgaaccaagtttaatacttaaacatttaaattttgtgacgctggcgaat
gaagatgctaaacgctggtgtcaaggtcaattagtagatttaactcaagctaaaattaat
tatccagtgttaactgcacaagaggatatctatttagctacttataatgctacgggaatt
tttttaggtattagtctattaattgagcgtgacaacatacttaaaataaaacccaagata
gtctgttag
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