Chondrocystis sp. NIES-4102: NIES4102_18040
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Entry
NIES4102_18040 CDS
T05085
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
chon
Chondrocystis sp. NIES-4102
Pathway
chon03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
chon00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NIES4102_18040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
chon03400
]
NIES4102_18040
DNA repair and recombination proteins [BR:
chon03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NIES4102_18040
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NIES4102_18040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
Helicase_C
UvrB
ResIII
UVR
DEAD
AAA_30
AAA_22
P-loop_SecA
UvrD-helicase
AAA_25
AAA_7
Motif
Other DBs
NCBI-ProteinID:
BAZ44787
UniProt:
A0A1Z4RQP2
LinkDB
All DBs
Position
complement(2054935..2056935)
Genome browser
AA seq
666 aa
AA seq
DB search
MSLFNLQAPFEPQGDQPTAIADLTKSLQAGNTFQTLLGATGTGKTFSIANLITNVQKPTL
VLAHNKTLAAQLCNELRQFFPDNAVEYFVSYYDYYQPEAYIPVSDTYIEKTASINDEIDM
LRHSATRSLFERRDVIVVASISCIYGLGMPSEYLKAAVPLKLGMEVDQRELLRDLVSVQY
ARNDIEIERGRFRVKGDVLEIVPAYEDRIIRIEFFGDEIEALRYVDPVTGEILQSLNGIN
IYPARHFVTPEERLQQACQDIKAELETRLIELETENKLLEAQRLEQRCRYDLEMLQEVGY
CNGVENYSRHLAGRQPGEPPECLIDYFPDDWLLVIDESHVTVPQLRGMYNGDQARKKVLI
EHGFRLPSAADNRPLKADEFWQKVNQCVFVSATPAQWELEQSGDHVAQQIIRPTGVIDPE
ILVRPTDGQVDDLYGEINERVAKGERVLITTLTKKMAEDLSEFFAERDLKVQYLHSEIKS
IERIEILQALRKGEVDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSESSIIQTIGRA
ARHVQGQAILYADNLTNSMARAIEETERRRNIQIAYNKLHNIIPKPIIKNEENSILAFLD
ISRRLNSEQLEQITEQSAELPLEKIPELIKQLEVKMQEAAKALEFEEAAKYRDRILKLRE
KLLGRK
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atgagcctatttaatctccaagcaccctttgaacctcaaggagatcaacccaccgcgatc
gctgatcttactaaatcattacaagcaggaaatacttttcagactttactgggtgcaaca
ggcacaggtaaaactttttcaattgctaatttaattaccaatgtacagaagcctacttta
gttttggcacataataaaaccctagcagcccaactatgcaacgagttacggcagtttttc
ccagataatgctgtggaatattttgtcagttattacgattattatcagccagaagcctat
atccctgtcagtgatacctatattgaaaaaacagcctcaattaacgatgaaatagatatg
ttacgtcactcagcaacgcgatcgctttttgagaggcgagatgtgattgttgtggcttca
attagttgtatttatggtttggggatgccttcggaatatctcaaggctgctgtaccctta
aaattgggaatggaagtagatcaacgggaattattacgagatttggtatctgtacaatat
gcccgcaacgacattgaaattgaacgggggcggtttcgggttaaaggagatgttttagaa
attgttcctgcttatgaagatcgcattattcgcattgaattttttggggatgaaattgaa
gcattgcgttatgtcgatcctgtaacaggggaaattctacaaagtttaaatggaattaat
atttatcccgcccgacactttgttactcccgaagaaagattacagcaagcttgccaagat
attaaagcggaattggaaactcgtttaattgaattggaaacggaaaataaactcttagaa
gcccaaagactcgaacagcgttgtcgttatgacttagaaatgttgcaagaagtcggttat
tgtaacggtgtggaaaactattctcgacatttagcaggtagacaaccaggtgaaccccca
gaatgtttgattgattatttccccgatgattggttattagttattgatgaatctcacgtt
actgtacctcaattaagaggaatgtataatggcgatcaggcgcgcaaaaaagtattaatt
gaacatggttttagattaccttcggctgccgataaccgcccgctaaaagcagatgaattt
tggcaaaaagtaaatcaatgtgtatttgtttctgcaacccctgcccaatgggaattagaa
caatcaggcgatcatgttgcccagcagattattcgtcctacaggcgtaattgatcctgag
attttagttcgtcctacagatgggcaagtggatgatctttatggcgaaattaatgaacga
gtggctaaaggggaaagggttttaattactaccttaactaagaagatggcagaggatctt
agtgaattttttgccgaacgagatctcaaagttcaatatctccattccgaaattaaatca
atcgaacgcattgaaattttacaagcactacgtaaaggggaagtagatgttttaattggg
gttaatcttttacgggaaggtttggatctacctgaagtatctttagtggctattcttgat
gctgataaggaaggctttttacgttctgaaagttcaattattcaaactataggaagggct
gcccgtcacgtccaaggacaggctattttatatgccgataatttaactaatagtatggca
cgagcaattgaagaaaccgaaagacgacgtaatattcaaattgcttataataaactgcac
aatattatccccaaaccaattattaaaaatgaagagaattctatcttggcattcttagat
atctctcgccgtttaaactccgaacaattggaacaaatcactgaacaatcggctgaatta
cctttagaaaaaatccctgaattaattaaacagttagaagtcaaaatgcaagaggcagct
aaagccttagaatttgaagaagctgctaaatatcgcgatcgcattctcaagttaagagag
aaactattggggagaaagtaa
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