Chondrocystis sp. NIES-4102: NIES4102_29020
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Entry
NIES4102_29020 CDS
T05085
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
chon
Chondrocystis sp. NIES-4102
Pathway
chon03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chon00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NIES4102_29020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chon03019
]
NIES4102_29020
03400 DNA repair and recombination proteins [BR:
chon03400
]
NIES4102_29020
Enzymes [BR:
chon01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NIES4102_29020
Messenger RNA biogenesis [BR:
chon03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NIES4102_29020
DNA repair and recombination proteins [BR:
chon03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NIES4102_29020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
Cas3-like_C_2
ResIII
Atx10homo_assoc
Motif
Other DBs
NCBI-ProteinID:
BAZ45874
UniProt:
A0A1Z4RTT1
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All DBs
Position
3302879..3304372
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AA seq
497 aa
AA seq
DB search
MNIAWQTVKDRFKQVWGYEDFRYPQGEIIATLLARKDTLVILPTGGGKSICFQLPALLQT
GLTIVISPLVALMENQVKQLQQLKLPGALLHSELSRLERKQILQAIKDQKLSLLYLSPET
LLSLPVWEIISHPQIKITAIVLDEVHCLTQWGTTFRPAYRRLGAVRRSLLKYKPSGTKIA
IAAFTATADPPAQAAIIQVLELQQPEVFLVSPYRPNINLNIKTIWTPKGRKQATLKFIQA
HPNQSGLVYVRSRDCSQNLAAWLKSENYAVAAYHAGLITQERRKIEQDWLTDKIQFVICT
SAFGMGIDKPDVRWIIHFHAPELLAEYIQEIGRGGRDGKPAEALTLVSESTGWLNPEDKQ
RSQFFTRKLTQQYQQAQQIVKQLPSQGTVATIKEQFPQGEITLGILHSLGLIDWQDPFHY
RKRTSAISLNQLTNSQKHHQQQMQTYLITKQCRWQFLLQAFGFNKEAEKFRCGHCDNCCR
IRGKDKMIREDWRNLKL
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgaatattgcttggcagacagttaaagatagatttaaacaagtttggggatatgaagat
tttagatatcctcaaggagagataattgctactctcttagccagaaaagatactttagta
attctgccaacgggtgggggtaaatctatttgttttcagttaccagcactattacagaca
ggattaactattgtcatctctcctttagttgctttaatggaaaatcaggtaaaacaacta
cagcaattaaaattacctggagcattattacatagtgaattatcgcgtttagaaagaaaa
caaatcttacaagcaattaaggatcaaaaattaagcctgttatatttatctccagaaacc
ttacttagtctgcctgtttgggaaattatttcgcatccccaaattaaaattactgcaata
gttttagatgaggttcattgcctaactcaatggggaactacatttcgccctgcttatcgt
cgtttaggggcagtgcgtcgtagcttattaaagtataaaccatctgggacaaaaatagcg
atcgcagcttttaccgccaccgccgatcctccagcacaagcagcaattattcaagtatta
gaattacagcaaccagaagtttttttagttagtccctatcgtcctaatataaatttaaat
atcaaaactatttggactcccaaaggtaggaaacaagcaactttaaagtttattcaagct
caccctaatcaatctggtttagtttacgtgcgatcgcgcgactgtagtcaaaacctagca
gcttggttaaaatctgaaaattacgctgttgcagcatatcatgcaggtttaattactcaa
gaaagaagaaaaatagagcaagactggcttacagacaaaattcaatttgtaatttgtacc
tctgcttttggcatgggaatagataaacccgatgtacgttggatcattcattttcacgca
ccagaattattagctgaatatatccaggaaatcggtagaggtggtagagatggtaaacct
gctgaagctttaactttagtcagtgagtctactggttggcttaaccctgaagataaacaa
cgtagtcaattttttacccgtaaattaacacaacaatatcaacaagcacaacaaatagta
aaacaattacctagtcaaggtacagttgccacaattaaagaacaatttcctcaaggagaa
attactttaggcattctacatagtttaggtttaattgactggcaagatccttttcattac
cgtaaacgcacatctgcaattagtttaaatcagttaactaacagccagaaacatcatcaa
caacaaatgcaaacttatttaataacaaaacaatgtcgttggcaatttttattacaggct
ttcggatttaataaagaagcagagaaattcagatgtgggcattgtgataattgttgtcga
attagaggcaaagataaaatgataagagaagactggcgcaatttaaagttatga
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