Chondrocystis sp. NIES-4102: NIES4102_30370
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Entry
NIES4102_30370 CDS
T05085
Symbol
sigF
Name
(GenBank) group 3 sigma-70 RNA polymerase sigma factor F
KO
K03090
RNA polymerase sigma-B factor
Organism
chon
Chondrocystis sp. NIES-4102
Brite
KEGG Orthology (KO) [BR:
chon00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
chon03021
]
NIES4102_30370 (sigF)
Transcription machinery [BR:
chon03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NIES4102_30370 (sigF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r4_2
Sigma70_r3
Sigma70_ECF
HTH_Crp_2
HTH_17
SpoIIID
Xre-like-HTH
HTH_3
HTH_23
HTH_8
HTH_24
DUF134
Motif
Other DBs
NCBI-ProteinID:
BAZ46009
UniProt:
A0A1Z4RU84
LinkDB
All DBs
Position
complement(3461236..3462012)
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AA seq
258 aa
AA seq
DB search
MTACANKNIKIDSLNLFQQYQQRQTTDVRNQIMELNFGLVKKEAYHWMHQCNESYEDLLQ
VGSIGLIRAIERFDLEKGNAFSSFAIPYIRGEIQHYLRDKSCTLRIPRRWLELRQQSIAF
VHNFREEYHRQPTNNEIAQYLEIPLKEWQDIKLAYQNRKPLSLDVSVNNELENQTSLCDL
VADPKHRSFQLAYEDKVRLQQALDQLEDRTRNVLEFVFLHDLTQKETAQVLGISVVTVSR
QMKKGLNLLKKSMGQENL
NT seq
777 nt
NT seq
+upstream
nt +downstream
nt
atgacagcttgcgctaataaaaatattaaaatagacagtctgaatctatttcagcaatat
caacaaaggcaaacaactgatgttcgtaatcagataatggaattgaactttggcttggta
aaaaaagaagcttatcactggatgcaccaatgtaatgaaagctatgaagacttactacag
gtcgggtcaattggattaattagagctattgaacgttttgatcttgaaaaaggtaatgct
tttagttcttttgctattccttatattcggggcgaaattcaacattatctaagggataaa
agttgtaccctcagaattcccagacgttggttagagttaagacaacaatcaattgctttt
gttcataattttagagaagaatatcaccgtcaaccaactaataatgaaattgcccaatat
ttagaaatacctttaaaagaatggcaagatattaaactcgcttatcaaaatcgtaaacct
ttaagcttagatgtttctgtcaataatgagcttgaaaatcaaactagtttatgtgattta
gtagccgatcctaaacatcgtagctttcaattggcttatgaagataaagtgcgcctacaa
caagctttagatcagttagaagatcgtacaagaaatgttttagagtttgtttttctacat
gatttaacccaaaaggaaaccgctcaagtattaggtattagtgtagtaactgtttcccgt
caaatgaaaaaaggtttaaatttattgaaaaaatcaatgggacaagaaaacctctag
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integrated database retrieval system
