Chondrocystis sp. NIES-4102: NIES4102_33130
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Entry
NIES4102_33130 CDS
T05085
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
chon
Chondrocystis sp. NIES-4102
Pathway
chon03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chon00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NIES4102_33130 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chon03019
]
NIES4102_33130 (deaD)
03009 Ribosome biogenesis [BR:
chon03009
]
NIES4102_33130 (deaD)
Enzymes [BR:
chon01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NIES4102_33130 (deaD)
Messenger RNA biogenesis [BR:
chon03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NIES4102_33130 (deaD)
Ribosome biogenesis [BR:
chon03009
]
Prokaryotic type
rRNA helicases
NIES4102_33130 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
ResIII
CMS1
Cas3-like_C_2
Flavi_DEAD
HEM4
PhoH
AAA_19
CBP
Motif
Other DBs
NCBI-ProteinID:
BAZ46283
LinkDB
All DBs
Position
complement(3751674..3753140)
Genome browser
AA seq
488 aa
AA seq
DB search
MTTTFKDLGLSAACVAQLEELGFTEPTQIQQEAIPALLTGKDIVGQSQTGTGKTAAFSLP
ALELVSAQDKAVQALILTPTRELAQQVGQAIEDFSIGRKIYSLTVYGGQSIERQISRLRR
GVQIVVGTPGRIIDLLERQELNFDSLKLAILDEADEMLSMGFIDDIKKILRQTPKERQTA
CLSATMPREIKELIKNFLVDPIYITVKQKEAAPTRIDQHVYMVPRGWQKIKALQPILEIE
EPDSALIFVRTKRTASELTSKLQEYGHSVDEYHGNLSQMQRERLVKRFREGKIKMVVATD
IAARGLDVQDLSHVINYDLPDNTETYIHRIGRTGRAGKTGTAIALVHSGDRRTLKQIERR
LRTTIDIATIPNRSQVEAKRIGKLQTTIKETLAGERMASFLPLVRDLGDEYDAQAIAAAA
LQMVYDRDCPNWMKGDWDIPQETFDKPIIKDVKPKRNRPARKDNYSSPKSLPRTKTQAKI
RSQVIIEQ
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgacgactacttttaaagatttaggattatcagcagcttgtgtagcacaattagaagag
cttggatttacagaaccaactcaaattcaacaagaagcaataccagccctacttacaggg
aaagacattgtaggacaatctcaaacaggaacaggtaaaaccgcagccttttctttgcca
gctttagaacttgttagtgcgcaagacaaagcagtccaagcattaattctaactccaact
cgtgaactagctcaacaagtaggtcaggcgatcgaagatttctctataggaagaaaaata
tactccctaactgtatacggtggtcaatcaattgaaagacaaattagccgattacgtcgc
ggagttcaaattgtagtgggaacacctgggcgaattattgacttgttagaacgtcaggaa
cttaatttcgactccttaaaattggcgattttagatgaagccgatgagatgttgagtatg
ggctttattgacgatatcaaaaaaattcttcgtcaaacaccaaaagaaagacagactgct
tgtttatctgccaccatgccgagagaaattaaagagttgatcaaaaactttttagttgat
cctatatatattacagtaaaacaaaaagaagcagcaccaaccagaattgatcagcacgtt
tatatggtgcctcgtggatggcagaaaatcaaagccttgcagccaattttggaaatcgaa
gaaccagattcagctttaatctttgttcgtactaagcgtaccgcgagcgaattaacaagc
aagctacaagaatatggacacagtgttgatgaatatcatggtaatctcagccaaatgcaa
cgggaacggttagtcaaacgttttcgcgaaggcaaaattaaaatggtagtagcaacagat
attgcagccagaggtttagatgtacaggatctaagccatgtaatcaattatgacttgccc
gataatacagaaacctatatccatcgtattggacgtactggtagggctggaaaaacagga
acagcgatcgccctggtacattcgggagatcgtcgtaccctcaagcaaattgagcgtcgt
ttaagaacaactatagatatagctactattcctaaccgatctcaagtagaagcaaaacgc
atcggcaaactgcaaactactatcaaagaaactctagcaggggaaagaatggcatctttc
ttacctttggttagagatttaggggatgaatatgatgcgcaagcgatcgcagcagcagcc
ctacaaatggtttatgaccgtgattgtcctaattggatgaaaggtgattgggatattcct
caagagactttcgataaaccaattatcaaagatgtcaaaccaaagagaaatcgtcctgct
cgtaaggataattatagtagtccgaagtctcttccacgtaccaaaactcaagctaaaata
agatctcaagtaatcattgaacagtaa
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