KEGG   Chitinophaga horti: MKQ68_05310
Entry
MKQ68_05310       CDS       T09154                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
chor  Chitinophaga horti
Pathway
chor03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:chor00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    MKQ68_05310 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:chor03400]
    MKQ68_05310 (ligD)
Enzymes [BR:chor01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     MKQ68_05310 (ligD)
DNA repair and recombination proteins [BR:chor03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     MKQ68_05310 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S DNA_ligase_OB_2 mRNA_cap_enzyme DNA_ligase_C
Other DBs
NCBI-ProteinID: UYQ94507
LinkDB
Position
complement(1281163..1284021)
AA seq 952 aa
MALSTYKKKRSFSNTPEPQGGKPNKSVLRFVVQKHDASRLHYDFRLEMEGVLKSWAVPKG
PSLNPTDKRLAMMVEDHPFDYRSFEGIIPKGNYGAGTVIVWDEGTYEPLESTGDKKKDDK
ALLKQLASGSLKFTLHGQKLNGEFALVKLKNAENNAWLLIKHRDKYAKETDVTRKARSVV
TDRTLEEVEKASDRIYGEKSGVSTAKKAAALAPKKVAAAKKATASTSKKAAASTTKKAAA
KKATAPAPKKAAAKKATASTSKKAAAKKATAKADKALTPDLPKSRTTAAKAPAAADLKKA
PKKAFPKTLSPMLATLVNKPFDEPGWLYEIKWDGYRAVALSNKGTVELISRNNKSFNDKF
YPVHAAVEDWGINAIVDGEICVINDEGVSNFGNLQNWRSEADGQLIYYVFDLLWLDGKDL
TGLPLTERRALLAPLVPRDSIIRLSDSFSTTATEFLEAAAKMGLEGIIAKKADSLYYPGE
RSREWLKLKINKRHEVVIGGFTNNEGSAKTFSSLLVGVYEGKQLRYTGKIGTGFNTQQQK
EMMQLFKPLIVKKVPFTETPDVNKPSRFRPNPPHATVTWLKPELVCEVSYTEITSDGVMR
HPSFEGMREDKKASSVGADIPLNTAEVLEDEQPNPVKKLVKGAGKTDRKTLLNPSEKSQV
RQIQGHELSFSNLDKVYWPDDGYTKRDMLNYYYQVAQYILPYLIDRPQSLNRYPNGINGK
SFYQKDVTGKVPDWVQQFPYTTSEGEDKNFMVPQTEADLLYMANTGAIEMNPWNSTIHNP
DNPDWCCLDLDPDTGNTFEQVIETALTVKQVLDEMGIEGYPKTSGSTGIHIYIPLGAKYD
YDQCQLLGKIIATQVNERLPKFTSIERMTRNRKGKLYIDYLQNRAKATLAAAYSLRPKPG
ATVSMPLDWSEVKKGLKLKDFNIKNAMTRIKRNGDIFKPVLGKGIDLAKLLK
NT seq 2859 nt   +upstreamnt  +downstreamnt
atggctttatcaacgtataaaaagaagcgtagtttttcgaacactcccgagccccagggc
ggtaaacccaataaaagtgtattacgattcgtggtccagaagcacgatgcgagccggctg
cactacgacttccggctggagatggaaggcgtgctgaagagctgggccgtacccaaaggc
ccatcgttgaaccccacggataaacgcctggcgatgatggtggaagaccatccgttcgat
taccggagttttgagggcattatcccgaaaggcaactacggcgcgggtaccgtgatcgtg
tgggacgagggcacgtacgaaccactggaaagcacgggagataaaaagaaagacgataaa
gcgttgttgaaacagctggcgtccggctcactgaagttcacgctgcacgggcagaaactg
aatggcgaatttgcgttggtgaagttgaagaatgccgagaataatgcgtggttgctgatc
aaacacagggataaatatgctaaggaaacggatgtaacgcggaaggcacgctcggtggtg
acggatagaacgttggaagaagtggagaaagcgagtgacaggatttatggggagaaaagc
ggtgtatcaacagcgaagaaggcggctgcattagcacctaagaaggtagctgcggctaag
aaggccactgcatcaacgtcgaagaaagctgctgcatcaacaactaagaaggccgctgcc
aaaaaagcaactgcaccagcgcctaagaaagccgcggcaaagaaggcgactgcatcaaca
tcaaagaaagctgctgcaaaaaaggcaaccgcaaaagctgataaagccctcacccccgat
cttccaaaatcccgcaccacggcggcgaaagcccccgcagcagccgatctgaagaaagca
ccgaagaaagcgttcccgaaaacgctctcccccatgctggccaccctcgtaaacaaaccg
ttcgacgaaccaggctggctgtacgagatcaaatgggacggctaccgcgcggtggcgctc
agcaacaaaggaacggtggaactcatctcccggaataataaatcttttaacgataaattt
taccccgtacatgccgccgttgaggactggggcatcaatgccattgttgacggagaaatt
tgtgtgatcaacgatgaaggcgtatccaacttcggcaatttgcagaactggcgcagcgag
gcagacgggcagctgatctattacgtattcgacctcctatggctggatggcaaagacctt
acgggcctgccactcaccgaacgccgtgcattactggccccgctggtacctagagacagc
atcatccggttgagcgacagcttctctaccactgctaccgagttcctcgaagcggcggcg
aagatggggctggaaggtattattgccaaaaaggccgacagtctgtattaccccggcgaa
cgctcgcgcgaatggctgaaactgaagatcaacaagcgacatgaagtagtgatcggcggc
ttcacgaataacgaaggttctgcaaagacgtttagctccctgctggtgggcgtttatgaa
ggcaaacaactcaggtacaccggtaagatcggtaccggtttcaacacgcagcaacagaaa
gaaatgatgcagctcttcaaaccgctcatcgtgaagaaagtgcctttcaccgaaacaccc
gatgtaaataaaccatcccgcttccgccccaatccgccacacgccacggttacctggctg
aagcccgagctggtatgcgaagtaagctacaccgaaataaccagcgatggggtgatgcgt
cacccaagttttgagggcatgcgggaggataaaaaggccagcagtgtaggtgccgatatc
ccgctgaataccgcggaggtgttggaggacgagcagccgaacccggtaaaaaaactggtg
aaaggcgcaggtaagacagatcgcaaaacgttgctgaaccctagcgaaaagagccaggta
cgacagattcagggccatgaactcagcttctctaacctggataaagtatactggccggat
gatggctacacgaaacgggatatgctgaattactactaccaggtagcgcagtatatattg
ccatatcttattgaccggccacagtcgctgaaccgctacccgaacggcatcaacggtaaa
agtttttaccagaaggatgtaaccggcaaggtaccggattgggtgcagcagttcccatac
acgacgagtgagggcgaagacaaaaacttcatggtgccgcaaaccgaggccgacttgtta
tacatggccaataccggcgccattgaaatgaacccctggaacagcacgatccataacccg
gataaccccgactggtgttgcctcgatcttgatccggataccggcaatacgtttgaacag
gtgatcgaaacggcgctcaccgtgaagcaggtgctcgacgaaatgggcatcgaaggttat
cccaaaacctccggctctacgggcattcacatctatattccgctgggtgccaagtacgat
tacgaccaatgccagctgctcggaaaaatcatcgctacgcaggtaaatgaacgcctccca
aagttcaccagcatcgaacgcatgacgcgcaaccgcaaaggcaaattgtacatcgactac
ctgcaaaaccgcgcgaaagcaacgctggccgccgcttattccctccgccccaagcccggc
gccacggtatccatgccgctggattggtcggaagtgaagaagggattgaagctaaaagac
tttaacatcaaaaatgcgatgacccgcatcaaacggaacggggatatttttaaaccggtt
ttgggcaagggtattgatctggctaaactattgaaataa

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