Chitinophaga horti: MKQ68_05310
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Entry
MKQ68_05310 CDS
T09154
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
chor
Chitinophaga horti
Pathway
chor03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
chor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MKQ68_05310 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
chor03400
]
MKQ68_05310 (ligD)
Enzymes [BR:
chor01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MKQ68_05310 (ligD)
DNA repair and recombination proteins [BR:
chor03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MKQ68_05310 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
DNA_ligase_OB_2
mRNA_cap_enzyme
DNA_ligase_C
Motif
Other DBs
NCBI-ProteinID:
UYQ94507
LinkDB
All DBs
Position
complement(1281163..1284021)
Genome browser
AA seq
952 aa
AA seq
DB search
MALSTYKKKRSFSNTPEPQGGKPNKSVLRFVVQKHDASRLHYDFRLEMEGVLKSWAVPKG
PSLNPTDKRLAMMVEDHPFDYRSFEGIIPKGNYGAGTVIVWDEGTYEPLESTGDKKKDDK
ALLKQLASGSLKFTLHGQKLNGEFALVKLKNAENNAWLLIKHRDKYAKETDVTRKARSVV
TDRTLEEVEKASDRIYGEKSGVSTAKKAAALAPKKVAAAKKATASTSKKAAASTTKKAAA
KKATAPAPKKAAAKKATASTSKKAAAKKATAKADKALTPDLPKSRTTAAKAPAAADLKKA
PKKAFPKTLSPMLATLVNKPFDEPGWLYEIKWDGYRAVALSNKGTVELISRNNKSFNDKF
YPVHAAVEDWGINAIVDGEICVINDEGVSNFGNLQNWRSEADGQLIYYVFDLLWLDGKDL
TGLPLTERRALLAPLVPRDSIIRLSDSFSTTATEFLEAAAKMGLEGIIAKKADSLYYPGE
RSREWLKLKINKRHEVVIGGFTNNEGSAKTFSSLLVGVYEGKQLRYTGKIGTGFNTQQQK
EMMQLFKPLIVKKVPFTETPDVNKPSRFRPNPPHATVTWLKPELVCEVSYTEITSDGVMR
HPSFEGMREDKKASSVGADIPLNTAEVLEDEQPNPVKKLVKGAGKTDRKTLLNPSEKSQV
RQIQGHELSFSNLDKVYWPDDGYTKRDMLNYYYQVAQYILPYLIDRPQSLNRYPNGINGK
SFYQKDVTGKVPDWVQQFPYTTSEGEDKNFMVPQTEADLLYMANTGAIEMNPWNSTIHNP
DNPDWCCLDLDPDTGNTFEQVIETALTVKQVLDEMGIEGYPKTSGSTGIHIYIPLGAKYD
YDQCQLLGKIIATQVNERLPKFTSIERMTRNRKGKLYIDYLQNRAKATLAAAYSLRPKPG
ATVSMPLDWSEVKKGLKLKDFNIKNAMTRIKRNGDIFKPVLGKGIDLAKLLK
NT seq
2859 nt
NT seq
+upstream
nt +downstream
nt
atggctttatcaacgtataaaaagaagcgtagtttttcgaacactcccgagccccagggc
ggtaaacccaataaaagtgtattacgattcgtggtccagaagcacgatgcgagccggctg
cactacgacttccggctggagatggaaggcgtgctgaagagctgggccgtacccaaaggc
ccatcgttgaaccccacggataaacgcctggcgatgatggtggaagaccatccgttcgat
taccggagttttgagggcattatcccgaaaggcaactacggcgcgggtaccgtgatcgtg
tgggacgagggcacgtacgaaccactggaaagcacgggagataaaaagaaagacgataaa
gcgttgttgaaacagctggcgtccggctcactgaagttcacgctgcacgggcagaaactg
aatggcgaatttgcgttggtgaagttgaagaatgccgagaataatgcgtggttgctgatc
aaacacagggataaatatgctaaggaaacggatgtaacgcggaaggcacgctcggtggtg
acggatagaacgttggaagaagtggagaaagcgagtgacaggatttatggggagaaaagc
ggtgtatcaacagcgaagaaggcggctgcattagcacctaagaaggtagctgcggctaag
aaggccactgcatcaacgtcgaagaaagctgctgcatcaacaactaagaaggccgctgcc
aaaaaagcaactgcaccagcgcctaagaaagccgcggcaaagaaggcgactgcatcaaca
tcaaagaaagctgctgcaaaaaaggcaaccgcaaaagctgataaagccctcacccccgat
cttccaaaatcccgcaccacggcggcgaaagcccccgcagcagccgatctgaagaaagca
ccgaagaaagcgttcccgaaaacgctctcccccatgctggccaccctcgtaaacaaaccg
ttcgacgaaccaggctggctgtacgagatcaaatgggacggctaccgcgcggtggcgctc
agcaacaaaggaacggtggaactcatctcccggaataataaatcttttaacgataaattt
taccccgtacatgccgccgttgaggactggggcatcaatgccattgttgacggagaaatt
tgtgtgatcaacgatgaaggcgtatccaacttcggcaatttgcagaactggcgcagcgag
gcagacgggcagctgatctattacgtattcgacctcctatggctggatggcaaagacctt
acgggcctgccactcaccgaacgccgtgcattactggccccgctggtacctagagacagc
atcatccggttgagcgacagcttctctaccactgctaccgagttcctcgaagcggcggcg
aagatggggctggaaggtattattgccaaaaaggccgacagtctgtattaccccggcgaa
cgctcgcgcgaatggctgaaactgaagatcaacaagcgacatgaagtagtgatcggcggc
ttcacgaataacgaaggttctgcaaagacgtttagctccctgctggtgggcgtttatgaa
ggcaaacaactcaggtacaccggtaagatcggtaccggtttcaacacgcagcaacagaaa
gaaatgatgcagctcttcaaaccgctcatcgtgaagaaagtgcctttcaccgaaacaccc
gatgtaaataaaccatcccgcttccgccccaatccgccacacgccacggttacctggctg
aagcccgagctggtatgcgaagtaagctacaccgaaataaccagcgatggggtgatgcgt
cacccaagttttgagggcatgcgggaggataaaaaggccagcagtgtaggtgccgatatc
ccgctgaataccgcggaggtgttggaggacgagcagccgaacccggtaaaaaaactggtg
aaaggcgcaggtaagacagatcgcaaaacgttgctgaaccctagcgaaaagagccaggta
cgacagattcagggccatgaactcagcttctctaacctggataaagtatactggccggat
gatggctacacgaaacgggatatgctgaattactactaccaggtagcgcagtatatattg
ccatatcttattgaccggccacagtcgctgaaccgctacccgaacggcatcaacggtaaa
agtttttaccagaaggatgtaaccggcaaggtaccggattgggtgcagcagttcccatac
acgacgagtgagggcgaagacaaaaacttcatggtgccgcaaaccgaggccgacttgtta
tacatggccaataccggcgccattgaaatgaacccctggaacagcacgatccataacccg
gataaccccgactggtgttgcctcgatcttgatccggataccggcaatacgtttgaacag
gtgatcgaaacggcgctcaccgtgaagcaggtgctcgacgaaatgggcatcgaaggttat
cccaaaacctccggctctacgggcattcacatctatattccgctgggtgccaagtacgat
tacgaccaatgccagctgctcggaaaaatcatcgctacgcaggtaaatgaacgcctccca
aagttcaccagcatcgaacgcatgacgcgcaaccgcaaaggcaaattgtacatcgactac
ctgcaaaaccgcgcgaaagcaacgctggccgccgcttattccctccgccccaagcccggc
gccacggtatccatgccgctggattggtcggaagtgaagaagggattgaagctaaaagac
tttaacatcaaaaatgcgatgacccgcatcaaacggaacggggatatttttaaaccggtt
ttgggcaagggtattgatctggctaaactattgaaataa
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