Chitinophaga horti: MKQ68_13965
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Entry
MKQ68_13965 CDS
T09154
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
chor
Chitinophaga horti
Pathway
chor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MKQ68_13965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chor03019
]
MKQ68_13965
Enzymes [BR:
chor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MKQ68_13965
Messenger RNA biogenesis [BR:
chor03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MKQ68_13965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Utp25_C
PTP-NADK
rpo132
CMS1
Motif
Other DBs
NCBI-ProteinID:
UYQ91197
UniProt:
A0ABY6IUY2
LinkDB
All DBs
Position
3479427..3480701
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AA seq
424 aa
AA seq
DB search
MSFEQLGLIDPILRALETQGYTTPTPIQAQAIPVVLAKKDLLACSQTGTGKTAAFAIPIL
QLLYNDQKPGPRRIKTLILTPTRELAIQISENFRDYGAHTGIKHAVIFGGVSAHSQINQL
KQGIDILIATPGRLLDLWQQGHINLTGIQQFVLDEADRMLDMGFIHDVKRVIVKLPVVRQ
TLFFSATMPDEISHLANSILTNPTKVAVTPVSSTAQKVEQRLYYVDKKSKRNLLVHVLKD
TSITSALVFTRTKHGADRVAKDLAKAQITASAIHGDKSQNARQRALSDFKSGNIRVLVAT
DIAARGIDVDNLAYVINYEIPNVPETYVHRIGRTGRAGASGIALSFCDDEERAYVKDITK
VIAQQIPVVHEHPFLPEFNTNAAAAIPAVQLRQSSSQQANARKKNSRDNRKWHSNRPKSG
NRQQ
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
ttgtcttttgaacaattaggtcttatagaccccatcttacgtgcgctcgaaacgcagggc
tacactacacctacacctattcaggcacaagccataccagtagtactcgcaaagaaagac
ctgctggcctgttcgcaaaccggtaccggtaaaacagccgctttcgccatcccgatcctg
caattgttgtataacgatcagaagccgggaccgcgccgcattaaaacgctcattcttacg
cccacccgcgaactcgcgatacagatatccgagaacttccgcgactatggcgcacatacc
ggcatcaaacacgcggtgatattcggcggcgtatctgcccattcgcagattaaccagctg
aaacagggtatcgatatcctgatcgccacgccgggccgactgctggatctctggcagcaa
ggccacattaacctgacgggcatccagcaattcgttctcgatgaggccgaccgtatgctg
gacatgggctttattcatgacgtgaaacgtgtgatcgttaagctgcccgtagtacgtcag
acgctgttcttctcggctactatgccagatgaaatatcgcatctcgccaactctattctc
accaaccctacgaaggtagcggtaacaccggtatcctctacggcgcagaaggtggagcag
cggttgtattatgtagataagaaatcgaaacgtaacctgttggtgcacgtattgaaagac
acgtccatcaccagcgcacttgtattcacccgcaccaaacacggggccgatcgcgtagcg
aaagacctggccaaggcgcagatcaccgccagcgctattcatggcgataagtcgcaaaat
gcacgccagcgcgccctgtctgatttcaaatcggggaatattcgtgtactggtcgctacg
gatattgctgcccgtggtattgacgttgacaaccttgcgtacgtcatcaactacgaaatc
ccgaacgttcctgagacttatgtacaccgtatcggtcgtaccggtcgtgcaggcgcgagc
ggtatagcgctttctttctgtgatgatgaagaaagggcatatgtaaaagacattaccaag
gtaattgcccagcagatacccgtggtacacgaacacccgtttttaccagaatttaacacc
aatgcagcggcggcgatacctgctgtacagttgcgccagtcttcctcacaacaggcgaac
gccaggaagaagaacagccgcgacaaccgcaaatggcatagcaacaggcccaaaagcggg
aacaggcaacaatag
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