Chitinophaga horti: MKQ68_25215
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Entry
MKQ68_25215 CDS
T09154
Name
(GenBank) Fpg/Nei family DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
chor
Chitinophaga horti
Pathway
chor03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
chor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
MKQ68_25215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
chor03400
]
MKQ68_25215
Enzymes [BR:
chor01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
MKQ68_25215
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
MKQ68_25215
DNA repair and recombination proteins [BR:
chor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
MKQ68_25215
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
NFACT_N
Ribosomal_S13
7kD_DNA_binding
Motif
Other DBs
NCBI-ProteinID:
UYQ93387
LinkDB
All DBs
Position
complement(6178582..6179361)
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AA seq
259 aa
AA seq
DB search
MPELPDLQVFGANLQKMLKGKTVSKVQLKTGAKSNTTAASLRKALEGSKVHKVYREGKEL
RFAFDNDHVLGMHLMLHGKLIYVDTNAEQKNTLFGLHFHDGSTLSLTDYQGIANVSLDPE
AATAPDALSPELTAKYLSSRFEGSRAAVKNLLLDQHVVRGIGNAYADEILWEAGISPFSV
AKAIPAEMIDKLLKAIKSVLKEAMEQIRQKEPGIIAGEVRDFLKIHQHKNAESPGGYPIL
QKTKGGRKTYYTEEQTLFE
NT seq
780 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattacccgacctgcaagtatttggcgccaatctgcaaaagatgctgaaaggc
aaaaccgtgagcaaagttcaactcaaaaccggcgcaaaaagtaacactacggcagccagc
ctgcgtaaagcactggaaggcagcaaggtgcataaggtataccgggaaggcaaagagctg
cgctttgcttttgataacgaccatgtgttaggtatgcacctgatgctgcacggcaaactg
atatatgttgataccaacgcggaacaaaagaacaccctgttcggccttcactttcacgac
ggcagcaccctttcacttaccgattaccagggcatcgccaacgtgtccctcgatccggaa
gcggctacagcacccgatgcactgtcgccggaactgacggccaaatacctgtccagccgg
ttcgaggggtcgcgtgcagcggtaaaaaacctgttgctcgaccagcacgttgttcgcggc
atcggtaatgcttatgcggatgagatactctgggaggcaggcatttccccgttttcagtc
gcaaaggccattccggcagaaatgatcgataagttgctgaaggcgatcaaaagcgttttg
aaggaggcgatggaacagatcaggcagaaagagccgggcatcattgcgggcgaggtgcgc
gactttttaaaaatccatcagcataaaaacgcggaaagtcccggcggttaccccatcctg
caaaaaaccaaaggtggccgaaagacttattataccgaagaacagaccctgtttgaataa
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