Chlamydia psittaci RD1: Cpsi_6741
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Entry
Cpsi_6741 CDS
T02153
Symbol
rpoC
Name
(GenBank) putative DNA-directed RNA polymerase beta' chain
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
chr
Chlamydia psittaci RD1
Pathway
chr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
chr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Cpsi_6741 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
chr03021
]
Cpsi_6741 (rpoC)
03400 DNA repair and recombination proteins [BR:
chr03400
]
Cpsi_6741 (rpoC)
Enzymes [BR:
chr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Cpsi_6741 (rpoC)
Transcription machinery [BR:
chr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Cpsi_6741 (rpoC)
DNA repair and recombination proteins [BR:
chr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Cpsi_6741 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Biotin_lipoyl
Mei5
Motif
Other DBs
NCBI-ProteinID:
CBY17192
LinkDB
All DBs
Position
complement(785870..790051)
Genome browser
AA seq
1393 aa
AA seq
DB search
MFGEGSRDNVSLSKEGLFDKLEIGIASDITIRDKWSCGEIKKPETINYRTFKPEKGGLFC
EKIFGPTKDWECCCGKYKKIKHKGIVCDRCGVEVTLSKVRRERMAHIELAVPIVHIWFFK
TTPSRIGNVLGMTASDLERIIYYEEYVVIDPGKTDLNKKQLLNDAQYREVIEKWGKDSFV
AKMGGEAIYDLLKSEDLQSLLKELKDRLRKTKSQQARMKLAKRLKIIEGFVSSSNHAEWM
VLKSVPVVPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKAILRLKTPEVIVRNEKR
MLQEAVDALFDNGRHGHPVMGAGNRPLKSLSEMLKGKNGRFRQNLLGKRVDYSGRSVIIV
GPELKFNQCGLPKEMALELFEPFIIKRLKDQGSVYTIRSAKKMIQRGAPEVWDVLEEIIK
GHPVLLNRAPTLHRLGIQAFEPVLIEGKAIRVHPLVCAAFNADFDGDQMAVHVPLSIEAQ
LEAKVLMMAPDNIFLPSSGKPVATPSKDMTLGIYYLMADPTYCPEEHGGKVKIFRDVTEV
LRALYSGGFLDEHTNGRRDETGRGIHIHEKIKVRIDGQVIETTPGRVLFNRIVPKELGFQ
NYSMPSKRISELILQCYKKVGLEATVRFLDDLKDLGFIQATKAAISMGLKDVKIPEIKSE
ILKEAYDKVAIVKKQYDDGIITDGERHSKTISIWTEVSELLSDALYVEISKQTKSKHNPL
FLMIDSGARGNKSQLKQLGALRGLMAKPNGAIIESPITSNFREGLTVLEYSISSHGARKG
LADTALKTADSGYLTRRLVDVAQDVIITEKDCGTLNHIEITAIRQGSEELLPLKDRIYGR
TVSEDIYQPGDKSKLLAKNGDVITSAQAELIDDAGIESIKIRSTLTCESRRGVCAKCYGL
NLANGRLIGLGEAVGIIAAQSIGEPGTQLTMRTFHLGGIAATSSTPEIVTDCDGILVYMD
LRVVVGQDGNHLVLNKKGAIHVVRDEGRSLEEYKKLLSTKSIESLETYPVELGVKILVGD
GEKVTAGQRIAEVELHNIPIICDKPGFVKYEDLVEGISTEKVVNKNTGLVELIVKQHRGE
LHPQIAIYSDPGLTELVGTYAIPSGAIVSVEENQKVDPGMLLARLPRGAIKTKDITGGLP
RVAELVEARKPEDAADIAKIDGVVDFKGIQKNKRILVVRDEITGMEEEHLIPLTKHLIVQ
RGDHVMKGQQLTDGLVVPHEILEICGVRELQKYLVNEVQEVYRLQGVDINDKHVEIIVRQ
MLQKVRITDPGDTTLLFGEEVNKKEFYEENKRTEEEGGKPAQAVPVLLGITKASLGTESF
ISAASFQDTTRVLTDAACSSKTDYLLGFKENVIMGHMIPGGTGFDTHKRIKQYLEKEQEE
LVFDFVSESECAC
NT seq
4182 nt
NT seq
+upstream
nt +downstream
nt
atgtttggagaaggttctcgagacaatgtctctctatctaaagaggggctatttgataaa
ttagaaattggaattgcctcagatattactattcgcgataagtggtcttgtggggaaatc
aagaagcctgaaacaatcaattaccgtacgtttaaacctgaaaaaggtggactattttgc
gaaaagatttttggtcccacaaaggattgggaatgctgttgtggtaaatacaagaagatt
aagcataaaggtattgtttgtgatcgctgcggagtagaggttactctttctaaggttcgt
cgtgaacgtatggctcatattgagctggctgtgcctatcgtacatatatggttttttaag
actacaccatcaagaataggtaacgtcttaggaatgaccgcttctgatcttgaaaggatt
atttattacgaagaatatgtagttatcgatccaggtaagacagatttaaataaaaagcag
cttttaaatgatgctcagtatcgagaagtcattgagaagtggggaaaagattctttcgta
gccaaaatgggcggagaggctatctatgatttattgaaatcagaagatcttcaaagtcta
ttaaaagagcttaaggatcgtttgcgaaaaaccaaatctcagcaagccagaatgaaactt
gctaagcgattaaaaattatcgaaggttttgtctcttcttcgaatcacgctgagtggatg
gttttaaaaagtgttcctgtcgttccacccgatctacgtcctttagttccattagatggt
ggaaggtttgcaacttctgatttaaatgatctataccgtcgtgtaattaaccgaaataat
cgtttaaaagctattttaaggctaaaaactcctgaagtgatcgtacgtaatgaaaaacgt
atgttacaggaagccgtggacgctctatttgataacggtcgtcatggacaccctgtcatg
ggagcagggaatcgtccattaaaatccctttctgaaatgctaaaagggaaaaatggacgc
ttccgacaaaatcttttaggtaagcgtgttgattattctggacgttctgtcattatcgta
ggtcctgaattgaagtttaatcaatgcggtttgcctaaagaaatggctcttgagttgttt
gaaccgttcattattaaaagattaaaagatcagggtagtgtctatactattcgttctgct
aagaaaatgattcaacgtggagctcctgaagtttgggatgttctagaagaaattattaaa
ggccatccagtattgcttaaccgagcccccacactccaccgtttagggatacaggcgttt
gaacctgtattaatcgaaggtaaagcgattcgtgtgcatcccctagtctgtgcagcattt
aacgcggacttcgatggagaccaaatggctgttcacgtgccgctgtctatagaagcacaa
ttagaagccaaagttttgatgatggctcctgataacatcttcttgccgtcttctggaaag
cctgtcgctacaccttctaaggatatgaccttaggtatttactatctgatggcagacccg
acatattgcccggaagagcatggaggaaaagtcaaaatctttagggatgttacggaagtc
ttgcgagcattgtattctggcggattcctagatgagcatacaaatggtcgtcgcgatgaa
acaggccgtggtattcatattcacgagaaaattaaagtacgcatcgatggtcaggttatt
gaaactactccaggaagagttctgtttaatagaattgttcctaaagagttagggttccaa
aactatagcatgccaagtaagcgtatcagtgaattgattttacaatgctataaaaaagta
gggcttgaggctactgtacgcttcttagatgatcttaaagatttaggatttatccaagcg
acgaaagctgcgatctctatgggattgaaagatgtaaaaattcctgagattaaaagtgaa
attcttaaagaagcttatgacaaggttgccattgttaagaaacaatatgatgatggtatt
atcaccgatggtgaacgtcattctaaaactattagtatttggacagaggtttcagaactc
ttgtcagacgctctttatgttgaaattagtaagcaaactaaaagtaaacacaaccctctg
ttcttgatgatagattcaggagctcgaggtaataagtctcagttgaagcagttaggagct
ctacgaggtttaatggctaagccaaacggtgcgattatcgaatctccgattacctcgaac
ttccgcgaaggattaaccgttcttgagtattccatttcttctcacggtgctagaaaaggt
ttagctgatactgcattgaagacagctgactctggatatttaactcgaagacttgttgac
gtagctcaagatgtcatcattacggaaaaagattgcggaacattgaatcatatcgaaatt
actgcaattcgacagggttcagaagagcttctacctttaaaagatcgtatttatggtcgt
acggtatcagaagatatctatcaacccggtgataaaagtaagcttctagctaagaatgga
gatgtgattacatctgctcaggctgaacttattgatgatgctggaattgaaagtattaaa
atccgctctacacttacttgtgaaagtcgtcgtggtgtttgtgctaagtgttatgggtta
aaccttgctaatggtcgtctgattggtttaggagaagctgtgggtattatagctgctcaa
tccattggtgaacctggaacacagctaacgatgagaacgttccaccttggaggtatcgca
gctacatcttcaactccagaaattgttacagattgtgacggtatcctagtatacatggat
ctacgtgtggttgtgggtcaagatggaaatcacttagtcttgaataagaaaggtgctatc
catgttgtccgtgatgaaggacgtagtttagaagagtacaagaaacttctaagcaccaag
tctatagaaagtttagagacttatccggtagaactcggtgttaagattttagtaggtgat
ggggagaaggtaactgcaggccaaagaattgctgaggtcgagttacataatattccaatt
atctgtgataagcctggttttgtaaaatacgaagacttagtagagggtatttctacagag
aaagtagttaataagaacacaggtttagtcgagcttattgttaaacagcatcgtggagaa
ctgcatcctcaaattgctatttattctgatcccggtttgacggaattggttggaacatac
gctattccttctggagcgattgtttctgtcgaagaaaatcaaaaagtcgaccctggtatg
ttattagcaagattacctcgaggggcaattaagactaaggatattactggaggtctacct
agggttgctgaattagttgaagctcgtaagcctgaagacgctgcagatattgcaaagatt
gatggtgttgtagactttaaaggaattcagaaaaataaacgtattcttgttgttcgtgac
gaaataacaggaatggaagaagaacatctgattcctttgaccaagcacttgattgttcaa
cgtggagatcatgtgatgaagggacagcagctaacagatggtttggttgttccacatgaa
atcctagaaatttgtggcgttcgcgaattgcaaaagtacttagtcaatgaggttcaagaa
gtttatcgtttacagggtgtagacatcaatgataagcatgtagaaatcattgttcgtcaa
atgttgcagaaggttcgcattactgatccaggtgatactactttactcttcggagaagaa
gtaaataaaaaagaattctacgaagagaataaacgtacagaagaggaaggtggaaaacca
gcacaagctgttccagtattattgggaattaccaaagcttcgttgggtacagaatccttt
atttctgccgcatccttccaagatacgactcgggtattaactgatgctgcgtgtagtagt
aaaactgactacctgttaggattcaaagagaatgtcattatggggcatatgattcctgga
ggtacagggtttgatacacacaagcgtattaagcagtacttagaaaaggaacaagaggaa
cttgtctttgactttgtaagcgaatctgaatgcgcttgttag
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