Chlamydia psittaci RD1: Cpsi_8591
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Entry
Cpsi_8591 CDS
T02153
Name
(GenBank) putative transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
chr
Chlamydia psittaci RD1
Pathway
chr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
chr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Cpsi_8591
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
chr03400
]
Cpsi_8591
Enzymes [BR:
chr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Cpsi_8591
DNA repair and recombination proteins [BR:
chr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Cpsi_8591
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
DUF3638
ERCC3_RAD25_C
AAA_30
RecG_dom3_C
ADDB_N
AAA_19
PhoH
Motif
Other DBs
NCBI-ProteinID:
CBY17369
LinkDB
All DBs
Position
995788..999045
Genome browser
AA seq
1085 aa
AA seq
DB search
MPMDFDPVNLNLSILPEITNTSVPLLIENILPGARSFLAAKFFYERKESVVMITTRSRID
DLFEDLSSFLGFPPVEFPSSEIDLSPKLVNIDAVGKRDKVLYDLYQKKAPIFCVTTLKAL
LEKTRSPKDTAHQHLDIQVGDVLDPDIMIDLCKNLGYRHETLASDKGEFAYRGGIIDIFP
LSSPEPFRIEFWGEKIISIRPFNPSDQLSTGKVSKLSISPATKNSGTEVLSHCLLDYFDT
PPAFLFDNLTLLEDDFSEISGTLSSLPNRFLPIQDLCRRAFQSQTIFFEEKNFPNVRTIK
NTQVNIEVFHCDIQASRLVAPFIYPNEVIDEQENPLLGFLQKLQEYIPNKGQPFNVALYN
TKAKSLKEARALIETLSQSSIHIYEKPGNLSSSFALVNERFAAISLAEFASTKVLRRQKQ
RNYFSVTTEEVFVPIPGETVVHLHNGIGKFIGMEKKPNHLNIETDYLVLEYADKARLYVP
SDQAYLISRYVGVSDKTPDLHNLNGSKWKRSRDLSEKSLILYAEKLLQLEAQRSTTPSFI
YPPHGEEVIKFEESFPYEETPDQLKAIEQIYSDMMSDKLMDRLICGDAGFGKTEVIMRAA
VKAVCDGQRQVIVMVPTTILANQHYETFTQRMAGLPINIAVLSRFSEGKALKKIFEDTAQ
GNIDILIGTHKLINKNLEFKNPGLLIIDEEQRFGVKVKDFLKERYPTIDCLTVSATPIPR
TLYMSLSGARDLSLITMPPLDRLPVSTFVLEHNEETLSAALRHELLRGGQAYVIHNRIES
IFRLGNTIRNLVPEARIAVAHGQMSSDELASIFQKFKDQETNVLVATALIENGIDIPNAN
TILVDQADKFGMADLYQMKGRVGRWNRKAYCYFLVSHLDRLSGPAAKRLQALNKQEYGGG
MKIALHDLEIRGAGNILGTDQSGHISAIGFNLYCKLLKKTVAALKNNSSPLLFNDDVKIE
FPYKSRIPDTYIDLASLRIEFYQKIGGAEDAEQLDLIKEEMRDRFGPLPEEVLWLFALAH
VRLFALQHNISSIKGTGNALYIQQCHGKTEQIKKTLPYSLSPTPELLVAEVLESIEKAFP
LKTPR
NT seq
3258 nt
NT seq
+upstream
nt +downstream
nt
atgccaatggatttcgacccagttaatttaaacctatctattttacctgaaataactaac
acctctgttccattactaatagaaaatatccttcctggggctcgtagtttcttagctgct
aagtttttctacgagaggaaagagtctgtggtaatgattaccacgcgctctcgtattgat
gatctctttgaagatctttcttcatttttaggattccctcctgtggagtttccttcatca
gaaatagacttatctccaaagcttgttaatatcgatgctgttgggaaacgtgataaggtt
ctttacgatttgtatcagaaaaaagcccctatattttgtgtaacaacactaaaagcttta
ctagagaaaactcgatcaccaaaagatacagctcaccaacatttagatatccaagttgga
gatgttcttgatcctgatatcatgatcgatctatgtaaaaatttaggttatcgccatgaa
actcttgccagcgataagggagagtttgcttatagaggagggattattgatatctttcct
ctatcttctccagaacctttccggatagagttttggggagaaaagatcatctcaatacgt
ccttttaatccatctgatcaactctcaacagggaaagtttccaagctgtctatatcccca
gccacaaaaaattcggggacagaagttttatcacactgcctattggattattttgataca
cccccagcatttctcttcgataatttaaccttgttagaagatgatttctcggagatttca
gggacgttgtcttcgctacctaaccgttttctacctatccaagatttatgtcgacgtgct
tttcaatctcagacgattttctttgaagagaaaaacttccctaatgttcgtacaattaaa
aatacccaagtaaacattgaagtcttccactgcgacattcaagcttcccgacttgttgct
ccttttatctatcctaacgaagttatcgacgaacaagaaaatccccttcttggttttcta
caaaagcttcaagaatatatccctaacaaaggacaaccgtttaacgtagccctctacaat
acaaaagcaaaatctttaaaagaagctcgggctctaatagaaacgctaagccagagctct
atacatatctatgaaaaacctgggaatctctcttctagctttgctcttgtaaacgaaaga
tttgctgctatttccctagcggaatttgcttctacaaaagtattgcgaaggcaaaaacag
agaaattatttttccgtaactactgaagaagtattcgttcctattcctggagagacagtt
gttcatttacacaatggtattggcaaatttatcggaatggaaaagaagccaaaccattta
aatattgaaactgactatctagttcttgaatatgccgacaaagcacggctgtatgtgcct
tcagaccaagcctatctgatttcacgttacgtaggagtttctgacaaaactcctgacctt
cataatctaaatggctctaaatggaaacgatctcgagatctctctgaaaagtctcttata
ttatatgctgagaaactccttcagctcgaagcacagcgttccacgactccttcatttatt
tatcctccccatggagaagaggtaattaaattcgaagagagctttccttatgaagaaact
ccagatcaattgaaagcgattgagcaaatctattccgatatgatgtccgataagctcatg
gaccgtttaatttgcggtgatgcaggattcggaaagacggaagtcattatgcgagctgct
gtgaaagcggtttgtgatggtcagcgacaggttattgttatggtccccacaaccattcta
gcaaatcagcattacgaaactttcacccaacgtatggcagggttaccgataaatattgct
gttctttcgcgcttttctgaagggaaggctctgaaaaaaatctttgaggatacagctcaa
ggcaatattgatattttaatcggcacacacaagttaataaataaaaacttagaattcaaa
aatcctggtttattgattattgatgaggaacaacgttttggtgttaaagttaaagatttc
ctcaaggaacgttaccctacgatagactgtctcacagtatcagctacacctattccgaga
acattatacatgtctttgtcgggagccagggacctctctttgattaccatgcctccatta
gatagactgcctgtttctacttttgttttagaacacaatgaagaaactctatctgcagcc
ttacggcacgaattattgcgaggtggtcaagcatacgtaattcataatcgtattgagagc
atttttagattagggaatacaatacggaacttggtaccagaagcacgtattgctgttgct
catggccaaatgtcttcagatgagttagcttctatttttcaaaaatttaaggatcaagaa
accaatgtccttgtagcaacagcacttatagaaaatggtatcgatattcctaatgccaat
acgattttagtcgaccaagcagataaatttggcatggctgatctgtatcagatgaaaggt
cgtgtaggaagatggaatagaaaagcttactgttattttttagtttcccatttagataga
ttatctggtcctgctgcaaaacgtttacaagctttgaataaacaagaatatggaggagga
atgaagatcgctctccatgatttagaaattcgtggcgcaggaaatattttaggaaccgat
caatccgggcatatcagtgcgattggattcaacctctactgtaagttattgaaaaaaacg
gttgctgctttaaagaacaactcttctcctttattattcaacgatgatgtaaaaatagag
tttccttataaatcccgcatacctgatacctatatagatttggcgtctctgcgtatagaa
ttttaccagaaaatcggtggtgctgaagatgccgaacagttagatttgataaaagaagag
atgcgcgatcgcttcgggcctctacccgaagaggtcttatggttatttgcattagctcac
gtacgtctatttgctctacaacacaatatttctagcattaaaggtacggggaatgctttg
tatattcaacaatgtcatggaaaaaccgagcaaataaagaaaacattaccctattcttta
tctcccaccccagaactcctggtagctgaagtgttagaatctatagagaaagcatttcct
ctaaaaacccctcgttaa
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