Chryseobacterium sp.: F7R58_10360
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Entry
F7R58_10360 CDS
T09035
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
chra
Chryseobacterium sp.
Pathway
chra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F7R58_10360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chra03019
]
F7R58_10360
03009 Ribosome biogenesis [BR:
chra03009
]
F7R58_10360
Enzymes [BR:
chra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
F7R58_10360
Messenger RNA biogenesis [BR:
chra03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
F7R58_10360
Ribosome biogenesis [BR:
chra03009
]
Prokaryotic type
rRNA helicases
F7R58_10360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
QFG53934
LinkDB
All DBs
Position
complement(2194771..2196504)
Genome browser
AA seq
577 aa
AA seq
DB search
MNLFTETNLSPEILKAVGELGFVSPTEIQKQTIPFISTDIRDLIALAQTGTGKTAAFSLP
ILDMIDDGSRKIQFLVLCPTRELCLQITKDIKNYSKYMRDIKTTAVYGGSSISDQIRSLR
DKPQIIVGTPGRVIDLINRKALDFSEIQWLVLDEADEMLSMGFKDDLETILRETPETKHT
YLFSATMNKEVERISKNYLTEPHRISVGSINEVKKNIQHEYYVVGYRHKKEALKRLIDAN
PNQYSIIFCRTRMETQEVADFLMQNGYAADALHGDLSQAQRDTVMKKFRLKNIDILVATD
VAARGLDVNSLTHVIHYSLPDDPEVFVHRSGRTGRAGKDGISMALIKPEESRKLKQIKMS
TKIDIIEKKIPTGDAIIKAQVGGVFEKLFTEHEEFFTFDDALIPDLSDFSKEELVHKLLQ
LQLRDLAMFYKDKNDMVDQKFSSDDRGESRRDRNRRDRDERGRGDRDRGNDRRDSFRDGG
RDGGRDFGRDRKPKRSNGDMVRFFFNLGKRDHLKKMDMLEILNKATAKSKKRPDIGDIEI
MEKFSFFEVEKSFKDEVIKGLKTQKFKGKEMRAEEAN
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atgaatttatttacggagaccaacttaagtcctgaaattttgaaggcagttggcgaactg
ggctttgtaagcccaacagaaatccaaaaacagactattccttttatctctacagatata
cgcgatctcatcgcacttgcgcaaacaggaacaggcaaaacagcagcattttcgcttccg
attttggatatgattgacgacgggagtcgcaaaatccaatttttggtgctttgtcctacc
agagaactttgtttgcagattaccaaagacattaaaaattattcgaaatacatgagagac
atcaagaccactgcggtttatggtggatcgagtatttccgaccaaatccgctccctgcgt
gataaaccacagattattgtgggtacaccggggcgtgtgatcgaccttatcaacagaaaa
gcacttgatttttcagagatacagtggcttgttctggacgaagctgatgaaatgctttcc
atgggtttcaaagatgacctggaaacgatactgagagagacccctgaaaccaaacatacc
taccttttctcggcaacgatgaacaaggaggtggagaggatctctaaaaactaccttaca
gaacctcaccgcatttctgtgggttcaataaatgaggtgaagaaaaacattcagcatgaa
tattatgtggtaggttaccgtcataagaaagaagcgctgaaaagacttattgacgccaac
ccaaatcaatattccatcattttctgccgtacccgtatggaaactcaggaggttgcagat
ttcctgatgcagaacggttatgccgcagatgcacttcatggcgaccttagccaggcacag
agggatacggtgatgaagaaattcagactgaaaaatattgacattttggtagctaccgat
gtggctgcccgtggtcttgatgtgaattcccttacccatgtaatccattattcactgccg
gacgatccagaagtattcgtacaccgtagcggccggacaggacgtgccggaaaagacgga
atctccatggcgcttatcaagcctgaggagtccagaaaactgaagcagataaagatgtcc
accaaaattgacatcattgaaaagaaaattcctacaggtgacgcaatcattaaagcacag
gtaggtggtgttttcgaaaaactgtttaccgagcacgaggagtttttcacttttgatgat
gctctgattccggatctttccgatttcagtaaagaagaattggtacacaaacttctgcag
ctgcagctaagggacctggcgatgttctataaggataagaacgacatggtagaccagaaa
ttcagcagtgacgaccgtggtgaaagccgccgcgaccgtaaccgccgcgaccgcgatgag
aggggaagaggtgatcgtgaccgtggtaatgaccgccgggacagtttccgtgacggtggc
agagacggtggccgtgattttggccgggacaggaaaccgaaaagaagtaacggcgatatg
gtgagatttttcttcaaccttggaaaaagagaccacctgaaaaaaatggatatgcttgaa
atcctgaacaaggccaccgcaaaatccaaaaaacgtccggacatcggtgatattgaaatc
atggagaagttttccttctttgaagttgagaaatccttcaaggatgaggttataaaaggc
ctgaaaacccagaagtttaaaggaaaggaaatgagagctgaagaggccaactaa
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