Chryseobacterium sp.: F7R58_10730
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Entry
F7R58_10730 CDS
T09035
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
chra
Chryseobacterium sp.
Brite
KEGG Orthology (KO) [BR:
chra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
chra03009
]
F7R58_10730 (rlmD)
Enzymes [BR:
chra01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
F7R58_10730 (rlmD)
Ribosome biogenesis [BR:
chra03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
F7R58_10730 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
TRAM
Cons_hypoth95
TRM5-TYW2_MTfase
Methyltransf_11
MTS
Methyltransf_15
N6_N4_Mtase
Methyltransf_2
PCMT
RrnaAD
PrmA
Methyltransf_12
2-ph_phosp
Fan1_SAP
Methyltransf_4
Cytomega_gL
Motif
Other DBs
NCBI-ProteinID:
QFG53999
UniProt:
A0A5P5ZR85
LinkDB
All DBs
Position
complement(2279815..2281227)
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AA seq
470 aa
AA seq
DB search
MSKNRRKNQILENIQLVSAGAKGVAIGRTAEGKTVLVSGAVPGDRVNARVKKAKSNYFEA
ETVEILEPSPFRVEPKCIHFGVCGGCKWQNLSYEKQLDIKQDEVFNHIKRIGGLEDFETL
PILGSAEQYFYRNKMEFSFSNARWLTQYEISSEENFGSRDALGFHIPGMWSKILDLKECW
LQEPPSNDIRLAVRNYAAVNGLDFFDVKSQEGFLRTLMLRQNSMGEWMVLFQLFREEKEN
REKLFEFLLKEFPQIKTLVYTINSKQNDSIYDQEVITYFGDGFIMEEMDGLKFKIGPKSF
FQTNYRQALELYRKTLEFADLQGHEVVYDLYTGTGTIAQYVARNAKQVIGIESVPEAIAA
AKEHAELNGLSNCTFYCGDMKDIFNDEFLANHPPADVLITDPPRDGMHQKVVEQILKLAP
QRIVYVSCNSATQARDLALMKDQYRLVKILPVDMFPQTHHVENIALLERI
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaaaacagaagaaaaaatcagatactcgaaaatattcagcttgtttccgccggt
gcaaaaggcgtggccataggccgtaccgccgagggcaaaaccgtgctcgtgtcgggcgca
gttcccggcgaccgtgtaaatgcgcgcgtgaaaaaagcgaaatccaactactttgaagcc
gaaaccgtagaaatactggaaccttcccctttccgtgtggagcctaagtgtattcatttc
ggcgtatgtggtgggtgcaagtggcagaacctgtcctacgagaagcaactggacattaaa
caggatgaggtctttaaccatattaaaaggattggtgggctcgaagatttcgaaaccctg
cctattctgggcagcgccgagcaatatttttaccgcaacaaaatggagttttcattctcc
aatgcgcgctggcttacccagtatgaaataagttcggaagagaatttcggcagccgcgat
gccctgggctttcatatccccggaatgtggagcaaaatcctggacctgaaggaatgctgg
cttcaggaaccaccttccaacgacatccggttggcagtccgcaactatgccgctgtcaac
ggtctggatttttttgatgtaaaaagtcaggaaggtttcctgcggaccttgatgctgcgc
caaaactcgatgggggagtggatggtacttttccagctcttccgtgaggaaaaggaaaac
cgcgaaaagcttttcgaatttttgctcaaggaatttccccagattaaaactttggtttat
accataaacagtaagcagaatgactccatttatgaccaggaagtcataacctactttggt
gacggctttataatggaagaaatggacggcctgaagttcaagattgggcccaaatccttt
ttccagaccaattaccgccaggcgcttgagctgtaccgcaagactcttgaatttgccgac
ctgcagggccatgaagtagtgtatgacctttacacaggtaccggaaccattgctcagtac
gtggcccgcaatgcaaaacaggtcatcggcattgagtccgtacccgaagctattgctgcg
gcaaaggagcatgcggaactgaacgggctttccaactgtaccttctactgcggagatatg
aaggatatttttaatgatgaattcctggccaaccatccaccggcagatgtacttattacc
gacccgccgcgcgacggtatgcaccagaaggtggtggagcagatcctgaaacttgctcct
cagcgtattgtctacgtaagctgtaattcggccacccaggcccgggaccttgcccttatg
aaagaccagtaccgtttggtgaagatccttccggtagatatgttcccgcagacgcaccat
gtagagaatattgccctcctggagcgtatataa
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