Chromobacterium phragmitis IIBBL 274-1: DK843_02525
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Entry
DK843_02525 CDS
T05744
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
chrb
Chromobacterium phragmitis IIBBL 274-1
Pathway
chrb03410
Base excision repair
chrb03430
Mismatch repair
chrb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
chrb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
DK843_02525 (recJ)
03430 Mismatch repair
DK843_02525 (recJ)
03440 Homologous recombination
DK843_02525 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
chrb03400
]
DK843_02525 (recJ)
DNA repair and recombination proteins [BR:
chrb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
DK843_02525 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
DK843_02525 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DK843_02525 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Glyco_transf_4
Motif
Other DBs
NCBI-ProteinID:
AXE33286
UniProt:
A0A344UDD8
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All DBs
Position
complement(539897..541585)
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AA seq
562 aa
AA seq
DB search
MSQIVTREVPAELQHKLLGQGLTPLQARLYAARGILDSQELDYGLKGLLPYQNLKNAEAM
ASKLADAIAADKRLLVVADYDADGATACAVAVKGLSMLGARISFIVPNRFEYGYGLTPEI
VELASQKRPDIIVTVDNGIASVAGVEAAKALGIEVLVTDHHLPGDALPDALIVNPNQPGC
EFPSKNLAGVGVMFYVLMALRAEMRRRGAFDEQTQPNLGVLLDLVALGTVADVVRLDRNN
RTLVENGLKRMRAGKMAPGIAALFRVAGRAHYKANTFDLGFTLGPRLNAAGRLDDMSLGI
ACLLASNEEQAMRLAQELDKLNRERRGIEAGMQDEALAALSGIDADNRYTLSLYRDDWHQ
GVVGIVASRLKERFHRPSIVFAPGDEGEIKGSGRSISGFHLRDALDLVYKRHPGLILKFG
GHAMAAGLSLDERRFGEFQQAFEAVARELLDEKQLTRTIETDGSLPARDVNLQLAETLAA
EVWGQGFPAPYFHDPFIVVNQKLVGDKHLKLRLARDGCEFDAMLFNHADWLPDRIQAVYQ
LIANEWQGRKELQVYLQHWTAC
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcaaatcgtcactcgagaagtgcccgccgaactgcagcacaagctgcttggccaa
gggctgactccgctgcaggcgcggctgtacgccgcccgcggcatcttggacagccaggag
ctggattacggcctgaaagggctgctcccttatcaaaatctgaagaacgccgaggcgatg
gccagcaaattggccgacgccatcgccgccgacaagcgcttgctggtggtggccgactac
gacgctgacggcgccactgcttgcgcggtggcggtcaaagggctttccatgctgggcgcg
cgcatcagcttcatcgtgcccaaccgcttcgaatacggctacggcctgacgccggaaatc
gtcgagctcgcgtcgcaaaagcggcctgacatcatcgtcaccgtcgacaacggcatcgcc
agcgtggcgggcgtggaagcagccaaggcgcttggcatcgaggtgctggtgaccgatcac
cacttgcctggcgacgcgctgcctgacgcgctgatcgtcaaccccaaccagccgggctgc
gagtttccgtccaagaacctggctggcgtcggcgtgatgttctacgtgctgatggcgttg
cgggcggaaatgcgccggcgcggcgcgttcgacgaacaaacccaacccaatctgggcgtg
ttgctcgacttggtggcgctgggcacggtggccgacgtggtgcggttggaccgcaacaac
cgcaccttggtggaaaacggcctcaagcgcatgcgcgccggcaagatggcgccgggcatc
gccgccttgttccgcgtggcgggccgcgcccactacaaggccaataccttcgatctaggc
tttaccctgggcccgcggctgaatgccgccggccggctggacgacatgagcctgggcatc
gcctgcctattggcgagcaatgaagagcaggcgatgcggctggcgcaggaattggacaag
ctcaaccgcgagcggcgaggcatcgaggccggcatgcaggacgaagcgctggcggcgctg
tccggcatagacgccgacaaccgctacacgctcagcctgtaccgtgacgactggcaccag
ggggtggtggggatcgtggcctcccggctgaaggaacgcttccaccggccgtccatcgtg
ttcgcgcccggcgacgagggcgaaatcaagggctccggccgctccatctccggcttccat
ctgcgcgacgcgctggatttggtctacaagcgccatccgggactgatcctcaagttcggc
ggccatgcgatggcggccgggctgagcctggacgagcgtcgtttcggcgagtttcagcaa
gccttcgaggcggtggcgcgcgagctgctggacgaaaaacagctgacccgcaccatagag
accgacggcagcctcccggcgcgggacgtcaatctgcagttggccgagacgctggcggcc
gaggtatgggggcagggcttcccggcgccgtacttccacgatcccttcatcgtggtgaac
cagaagctggtgggcgacaaacacttgaagctgaggctggcgcgcgacggctgcgagttc
gacgccatgctgttcaaccacgccgactggctgccggaccgcatccaggcggtgtatcag
ctgatcgccaatgaatggcagggccgcaaggagctgcaggtgtatttgcagcattggacc
gcttgctga
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